Amphritriteisimkania amoebophyrae^Ts

Citation

Formal styling

Amphritriteisimkania amoebophyrae^Ts corrig. Davison, Hurst, 2023

Effective publication

Davison, Hurst, 2023

Corrigendum

In SeqCode Registry from “Amphrikana amoebophyrae” (sic)

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:bsk8pkm4 (validated)

Canonical URL

https://seqco.de/i:31321

Nomenclature

Rank

Species

Syllabication

a.moe.bo.phy'rae

Etymology

N.L. gen. n. amoebophyrae, of amoebophyra

Nomenclatural type

NCBI Assembly: GCA_030408475.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

A species of Simkaniaceae bacteria. The type species was extracted through a metagenomic assembly pipeline applied to the syndinian parasite Amoebophrya sp. AT5.2 (accession SRR3080743). Species status was established based on sharing <95% Average Nucleotide Identity (ANI) with any other Simkaniaceae.

Classification

Bacteria » Chlamydiota » Chlamydiia » Chlamydiales » Simkaniaceae » Amphritriteisimkania » Amphritriteisimkania amoebophyrae^Ts

Parent

Amphritriteisimkania gtdb

Pseudonyms

• Amphrikana amoebophyrae (Original, corrected name)

Genomics

Accession

NCBI Assembly:GCA_030408475.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 91.55%
• Contamination: 0.0%
• Quality: 91.55

Ribosomal and transfer RNA genes

• 0 16S rRNAs
• 0 23S rRNAs
• tRNAs for 20 amino acids

Sequencing depth

158.0 ×

Source

• SRA: SRR3080743

Other features

• G+C Content: 36.81%
• Coding Density: 91.04%
• Codon Table: 11
• N50: 42,111 bp
• Contigs: 71
• Largest Contig: 203,538 bp
• Assembly Length: 1,800,129 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

CheckM was used to assess the completeness and contamination of the genome. 

Automated checks

Complete

See additional details

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Last modified 8 days ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_030408475.1
• GTDB Tree: s__Amphritriteisimkania amoebophyrae
• Wikispecies: Amphritriteisimkania amoebophyrae (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 10 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Davison, Helen Rebecca over 1 year ago

Submitted by

Davison, Helen Rebecca 12 months ago

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Endorsed by

Palmer, Marike 10 months ago

Validated by

Palmer, Marike 10 months ago

Date of priority

2023-12-05 12:08 PM (UTC)