Amphritriteisimkania amoebophyraeTs


Citation

Formal styling
Amphritriteisimkania amoebophyraeTs corrig. Davison, Hurst, 2023
Effective publication
Davison, Hurst, 2023
Corrigendum
In SeqCode Registry from “Amphrikana amoebophyrae” (sic)
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:bsk8pkm4 (validated)
Cannonical URL
https://seqco.de/i:31321

Nomenclature

Rank
Species
Syllabication
a.moe.bo.phy'rae
Etymology
N.L. gen. n. amoebophyrae, of amoebophyra
Nomenclatural type
NCBI Assembly: GCA_030408475.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
A species of Simkaniaceae bacteria. The type species was extracted through a metagenomic assembly pipeline applied to the syndinian parasite Amoebophrya sp. AT5.2 (accession SRR3080743). Species status was established based on sharing <95% Average Nucleotide Identity (ANI) with any other Simkaniaceae.
Classification
Bacteria » Chlamydiota » Chlamydiia » Chlamydiales » Simkaniaceae » Amphritriteisimkania » Amphritriteisimkania amoebophyraeTs
Parent
Amphritriteisimkania gtdb
Pseudonyms
  • Amphrikana amoebophyrae (Original, corrected name)

Genomics

Accession
NCBI Assembly:GCA_030408475.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 91.55%
  • Contamination: 0.0%
  • Quality: 91.55
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 0 23S rRNAs
  • tRNAs for 20 amino acids
Sequencing depth
158.0 ×
Source
Other features
  • G+C Content: 36.81%
  • Coding Density: 91.04%
  • Codon Table: 11
  • N50: 42,111 bp
  • Contigs: 71
  • Largest Contig: 203,538 bp
  • Assembly Length: 1,800,129 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
CheckM was used to assess the completeness and contamination of the genome. 
Automated checks
Complete
See additional details

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Davison, Helen Rebecca about 1 year ago
Submitted by
Davison, Helen Rebecca 6 months ago
Curators
Endorsed by
Palmer, Marike 4 months ago
Validated by
Palmer, Marike 4 months ago
Date of priority
2023-12-05 12:08 PM (UTC)

Publications
1

Citation Title
Davison, Hurst, 2023, Systematic and Applied Microbiology Hidden from plain sight: Novel Simkaniaceae and Rhabdochlamydiaceae diversity emerging from screening genomic and metagenomic data
Effective publication



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