Genome sc|0000005


Database

NCBI Assembly

Accession

GCA_003056285.1

Genomics

Accession
NCBI Assembly:GCA_003056285.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 99.03%
  • Contamination: 0.49%
  • Quality: 96.58
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 14 amino acids
Sequencing depth
75.0 ×
Source
Other features
  • G+C Content: 51.29%
  • Coding Density: 83.79%
  • Codon Table: 11
  • N50: 55,247 bp
  • Contigs: 39
  • Largest Contig: 161,417 bp
  • Assembly Length: 1,536,389 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2013-04
Location
Lat Lon: 38.063 S 176.36 E
Toponym
Geo Loc Name: New Zealand: Rotorua
Environment
Env Material: water and sediment
Env Biome: terrestrial geothermal area
Isolation Source: terrestrial hot spring
Other
Ph: 6.48
Depth: 4 m
Temp: 78.5
Package
Ncbi Submission Package: MIMS.me.water.6.0
Biosamplemodel: MIGS/MIMS/MIMARKS.water
All retrieved samples

Metadata retrieved 5 months ago


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