Derived from single-cell whole genome amplified DNA.

BioSample Accession(s)

SAMN50451124, SRS26087309

collection_date

2023-10

env_broad_scale

terrestrial biome

env_local_scale

woodland biome

env_medium

temperate woodland biome

geo_loc_name

Germany: BAM Federal Institute for Materials Research and Testing, Berlin

isolate

SPG140

isolation_source

single cell amplified by MDA; termite gut

lat_lon

52.443245 N 13.287523 E

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX30012780" alias="SPG142" center_name="SUB15521859" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX30012780</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB15521859">SPG142</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Single-cell genome sequencing of Pillotina corrugata</TITLE>
  <STUDY_REF accession="SRP606900">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP606900</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA1301810</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>Libraries were prepared using TruSeq PCR free library preparation kit</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS26087309">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS26087309</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN50451124</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>SPG142</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGA</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>GENOMIC SINGLE CELL</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS26087309</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA2189159</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX30012780&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX30012780&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
  <EXPERIMENT_ATTRIBUTES>
    <EXPERIMENT_ATTRIBUTE>
      <TAG>ENA-STATUS-ID</TAG>
      <VALUE>4</VALUE>
    </EXPERIMENT_ATTRIBUTE>
  </EXPERIMENT_ATTRIBUTES>
</EXPERIMENT>
</EXPERIMENT_SET>

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX30012779" alias="SPG140" center_name="SUB15521859" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX30012779</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB15521859">SPG140</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Single-cell genome sequencing of Pillotina corrugata</TITLE>
  <STUDY_REF accession="SRP606900">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP606900</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA1301810</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>Libraries were prepared using TruSeq PCR free library preparation kit</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS26087309">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS26087309</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN50451124</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>SPG140</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGA</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>GENOMIC SINGLE CELL</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS26087309</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA2189159</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX30012779&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX30012779&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
  <EXPERIMENT_ATTRIBUTES>
    <EXPERIMENT_ATTRIBUTE>
      <TAG>ENA-STATUS-ID</TAG>
      <VALUE>4</VALUE>
    </EXPERIMENT_ATTRIBUTE>
  </EXPERIMENT_ATTRIBUTES>
</EXPERIMENT>
</EXPERIMENT_SET>