Genome sc|0005497

Genomics

Accession

NCBI Assembly:GCA_054669185.1

Type

Single-Cell Amplified Genome (SAG)

Estimated Quality Metrics

• Completeness: 97.4%
• Contamination: 0.0%
• Quality: 97.4

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

500.0 ×

Source

• SRA: SRX30012780
• SRA: SRX30012779

Other features

• G+C Content: 43.2%
• Coding Density: 82.67%
• Codon Table: 11
• N50: 48,988 bp
• Contigs: 147
• Largest Contig: 115,426 bp
• Assembly Length: 3,056,337 bp
• Ambiguous Assembly Fraction: 0.11%

Submitter comments

Metrics are estimated from the Prokka prediction. The tRNA identification was done with tRNAscan-SE. Completeness was estimated using CheckM. CheckM2 provides a completeness of  94.3% with 0.2% contamination. Estimating the same genome completeness with BUSCO, using the spirochaetes_odb10 dataset, yields a completeness of 97.1% with 0% duplicated genes. 

Automated checks

Complete

---

Last modified 2 months ago

Sample Metadata

BioSample entries

• BioSample: SAMN50451124

Date

Collection Date: 2023-10

Location

Lat Lon: 52° 26′ 36″ N, 13° 17′ 15″ E

View map of sampling locations

Toponym

Geo Loc Name: Germany: BAM Federal Institute for Materials Research and Testing, Berlin

Environment

Isolation Source: single cell amplified by MDA; termite gut

Env Broad Scale: terrestrial biome

Env Local Scale: woodland biome

Env Medium: temperate woodland biome

Other

Not detected

Package

Not detected

All retrieved samples

• SAMN50451124: MIMAG Metagenome-assembled Genome sample from Pillotina corrugata

---

Metadata retrieved 2 months ago