Pillotina corrugata


Citation

Formal styling
Pillotina corrugata Treitli et al., 2026
Effective publication
Treitli et al., 2026
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:udhxf-g0 (validated)
Canonical URL
https://seqco.de/i:51288

Nomenclature

Rank
Species
Syllabication
cor.ru.ga'ta
Etymology
L. fem. part. adj. corrugata, wrinkled, corrugated
Nomenclatural type
NCBI Assembly: GCA_054669185.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Helical cells are 0.9–1.2 µm in diameter, with 26–30 parallel ridges. The length varies between 40 and 90 µm. Approx. 70–100 periplasmic flagella. The protoplasmic cylinder is 0.4–0.5 µm in diameter. Members of this species colonize the hindgut of the genus Kalotermes. They can be detected with the 16S rRNA-targeted oligonucleotide probe Kf-Pil-1449 (5'-GCAGCGCCCTCCTTTTACAA-3'). The type genome is from Kalotermes flavicollis

Includes all genomes that show ≥95% average nucleotide identity (ANI) to the type genome. The type genome has an estimated genome size of 3.14 Mbp and a GC content of 43.2 mol%. 

Classification
Bacteria » Spirochaetota » Spirochaetia » Spirochaetales » Spirochaetaceae » Pillotina » Pillotina corrugata
Parent
Pillotina

Genomics

Accession
NCBI Assembly:GCA_054669185.1
Type
Single-Cell Amplified Genome (SAG)
Estimated Quality Metrics
  • Completeness: 97.4%
  • Contamination: 0.0%
  • Quality: 97.4
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
500.0 ×
Source
Other features
  • G+C Content: 43.2%
  • Coding Density: 82.67%
  • Codon Table: 11
  • N50: 48,988 bp
  • Contigs: 147
  • Largest Contig: 115,426 bp
  • Assembly Length: 3,056,337 bp
  • Ambiguous Assembly Fraction: 0.11%
Submitter comments
Metrics are estimated from the Prokka prediction. The tRNA identification was done with tRNAscan-SE. Completeness was estimated using CheckM. CheckM2 provides a completeness of  94.3% with 0.2% contamination. Estimating the same genome completeness with BUSCO, using the spirochaetes_odb10 dataset, yields a completeness of 97.1% with 0% duplicated genes. 
Automated checks
Complete

Last modified 3 months ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
10 months ago and claimed 10 months ago by Treitli, Sebastian Cristian
Submitted
3 months ago by Treitli, Sebastian Cristian
Curators
Endorsed
3 months ago by St. John, Emily
Validated
5 days ago by Rodriguez-R, Luis M
Date of priority
2026-04-15 09:32 AM (UTC)

Publications
1

Citation Title
Treitli et al., 2026, BMC Biology Metabolic capacities of large “pillotinaceous” spirochetes from termite guts and their placement among Breznakiellaceae
Effective publication



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