Genome sc|0005500

Genomics

Accession

NCBI Assembly:GCA_054965555.1

Type

Single-Cell Amplified Genome (SAG)

Estimated Quality Metrics

• Completeness: 91.7%
• Contamination: 0.1%
• Quality: 91.2

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 67.0%)
• tRNAs for 20 amino acids

Sequencing depth

500.0 ×

Source

• SRA: SRX31921014

Other features

• G+C Content: 47.0%
• Coding Density: 88.14%
• Codon Table: 11
• N50: 42,619 bp
• Contigs: 121
• Largest Contig: 263,371 bp
• Assembly Length: 3,691,393 bp
• Ambiguous Assembly Fraction: 0.028%

Submitter comments

Metrics are estimated from the Prokka prediction. The tRNA identification was done with tRNAscan-SE. Completeness was estimated using CheckM. CheckM2 provides a completeness of  92.9% with 0.1% contamination. Estimating the same genome completeness with BUSCO, using the spirochaetes_odb10 dataset, yields a completeness of 93.7% with 0% duplicated genes. 

Automated checks

Complete

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Last modified about 3 hours ago

Sample Metadata

BioSample entries

• BioSample: SAMN54799087

Date

Collection Date: 2025-01-13

Location

Lat Lon: 52° 26′ 36″ N, 13° 17′ 15″ E

View map of sampling locations

Toponym

Geo Loc Name: Germany: BAM Federal Institute for Materials Research and Testing, Berlin

Environment

Isolation Source: termite gut

Env Broad Scale: terrestrial biome

Env Local Scale: woodland biome

Env Medium: temperate woodland biome

Other

Not detected

Package

Not detected

All retrieved samples

• SAMN54799087: MISAG Single Amplified Genome sample from Breznakiellaceae bacterium SP5

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Metadata retrieved about 3 hours ago