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Hollandinoides gharagozlouaeTs

Citation

Formal styling
Hollandinoides gharagozlouaeTs Treitli et al., 2026
Effective publication
Treitli et al., 2026
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:udhxf-g0 (validated)
Canonical URL
https://seqco.de/i:54982

Nomenclature

Rank
Species
Syllabication
gha.ra.goz.lou'ae
Etymology
N.L. gen. n. gharagozlouae, of Gharagozlou, in honor of Iran Dokht Gharagozlou, an Iranian/French structural biologist
Nomenclatural type
NCBI Assembly: GCA_054965555.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Large helical cells that colonize the hindgut of the termite Reticulitermes flavipes. They can be detected with the 16S rRNA-targeted oligonucleotide probe Rf-HolD1-990 (5'-GGCTTCCCCACTATGTCAAA-3'). The type genome is from the hindgut of the termite Reticulitermes flavipes. 
Classification
Bacteria » Spirochaetota » Spirochaetia » Spirochaetales » “Breznakiellaceae” » Hollandinoides » Hollandinoides gharagozlouaeTs
Parent
Hollandinoides

Genomics

Accession
NCBI Assembly:GCA_054965555.1
Type
Single-Cell Amplified Genome (SAG)
Estimated Quality Metrics
  • Completeness: 91.7%
  • Contamination: 0.1%
  • Quality: 91.2
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 67.0%)
  • tRNAs for 20 amino acids
Sequencing depth
500.0 ×
Source
Other features
  • G+C Content: 47.0%
  • Coding Density: 88.14%
  • Codon Table: 11
  • N50: 42,619 bp
  • Contigs: 121
  • Largest Contig: 263,371 bp
  • Assembly Length: 3,691,393 bp
  • Ambiguous Assembly Fraction: 0.028%
Submitter comments
Metrics are estimated from the Prokka prediction. The tRNA identification was done with tRNAscan-SE. Completeness was estimated using CheckM. CheckM2 provides a completeness of  92.9% with 0.1% contamination. Estimating the same genome completeness with BUSCO, using the spirochaetes_odb10 dataset, yields a completeness of 93.7% with 0% duplicated genes. 
Automated checks
Complete
See additional details
Last modified 8 days ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
4 months ago by Treitli, Sebastian Cristian
Submitted
4 months ago by Treitli, Sebastian Cristian
Curators
Endorsed
3 months ago by St. John, Emily
Validated
8 days ago by Rodriguez-R, Luis M
Date of priority
2026-04-15 09:32 AM (UTC)

Publications
1

Citation Title
Treitli et al., 2026, BMC Biology Metabolic capacities of large “pillotinaceous” spirochetes from termite guts and their placement among Breznakiellaceae
Effective publication


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