Hollandinoides gharagozlouae^Ts

Citation

Formal styling

Hollandinoides gharagozlouae^Ts Treitli et al., 2026

Effective publication

Treitli et al., 2026

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:udhxf-g0 (validated)

Canonical URL

https://seqco.de/i:54982

Nomenclature

Rank

Species

Syllabication

gha.ra.goz.lou'ae

Etymology

N.L. gen. n. gharagozlouae, of Gharagozlou, in honor of Iran Dokht Gharagozlou, an Iranian/French structural biologist

Nomenclatural type

Genome sc|0005500 ^Ts

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

Large helical cells that colonize the hindgut of the termite Reticulitermes flavipes. They can be detected with the 16S rRNA-targeted oligonucleotide probe Rf-HolD1-990 (5'-GGCTTCCCCACTATGTCAAA-3'). The type genome is from the hindgut of the termite Reticulitermes flavipes. 

Classification

Bacteria » Spirochaetota » Spirochaetia » Spirochaetales » “Breznakiellaceae” » Hollandinoides » Hollandinoides gharagozlouae^Ts

Parent

Hollandinoides

Genomics

Accession

NCBI Assembly: GCA_054965555.1 [NCBI | EMBL]

Type

Single-Cell Amplified Genome (SAG)

Estimated Quality Metrics

• Completeness: 91.7%
• Contamination: 0.1%
• Quality: 91.2

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 67.0%)
• tRNAs for 20 amino acids

Sequencing depth

500.0 ×

Source

• SRA Experiment: SRX31921014

Other features

• G+C Content: 47.0%
• Coding Density: 88.14%
• Codon Table: 11
• N50: 42,619 bp
• Contigs: 121
• Largest Contig: 263,371 bp
• Assembly Length: 3,691,393 bp
• Ambiguous Assembly Fraction: 0.028%

Submitter comments

Metrics are estimated from the Prokka prediction. The tRNA identification was done with tRNAscan-SE. Completeness was estimated using CheckM. CheckM2 provides a completeness of  92.9% with 0.1% contamination. Estimating the same genome completeness with BUSCO, using the spirochaetes_odb10 dataset, yields a completeness of 93.7% with 0% duplicated genes. 

Automated checks

Complete

See additional details

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Last modified 5 months ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_054965555.1
• Wikispecies: Hollandinoides gharagozlouae

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 5 months ago
• Submission process status
• Quality checks before valid publication

Registered

8 months ago by Treitli, Sebastian Cristian

Submitted

8 months ago by Treitli, Sebastian Cristian

Curators

• Rodriguez-R, Luis M (genomics)
• St. John, Emily (nomenclature)

Endorsed

8 months ago by St. John, Emily

Validated

5 months ago by Rodriguez-R, Luis M

Date of priority

2026-04-15 09:32 AM (UTC)