Keywords: GSC:MIxS;MIGS:6.0

BioSample Accession(s)

SAMD00899875, ERS27960103

collection_date

2022-08

env_broad_scale

wetland ecosystem [ENVO:01001209]

env_local_scale

wetland ecosystem [ENVO:01001209]

env_medium

sediment [ENVO:00002007]

geo_loc_name

Japan:Oze wetland

isol_growth_condt

not applicable

lat_lon

36.917 N 139.200 E

locus_tag_prefix

AMAF98

num_replicons

9

ref_biomaterial

not applicable

sample_name

Methylococcaceae sp. AF98

strain

AF98

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="DRX883256" alias="DRX883256" center_name="University of Shizuoka" broker_name="DDBJ">
  <IDENTIFIERS>
    <PRIMARY_ID>DRX883256</PRIMARY_ID>
    <SUBMITTER_ID namespace="University of Shizuoka">DRX883256</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>MinION sequencing of SAMD00899875</TITLE>
  <STUDY_REF accession="DRP017068" refcenter="HOKUDAI" refname="DRP017068">
    <IDENTIFIERS>
      <PRIMARY_ID>DRP017068</PRIMARY_ID>
      <EXTERNAL_ID label="BioProject ID" namespace="BioProject">PRJDB20581</EXTERNAL_ID>
      <SUBMITTER_ID namespace="HOKUDAI">DRP017068</SUBMITTER_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION/>
    <SAMPLE_DESCRIPTOR accession="DRS652091" refcenter="HOKUDAI" refname="DRS652091">
      <IDENTIFIERS>
        <PRIMARY_ID>DRS652091</PRIMARY_ID>
        <EXTERNAL_ID label="BioSample ID" namespace="BioSample">SAMD00899875</EXTERNAL_ID>
        <SUBMITTER_ID namespace="HOKUDAI">DRS652091</SUBMITTER_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME/>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <SINGLE/>
      </LIBRARY_LAYOUT>
      <LIBRARY_CONSTRUCTION_PROTOCOL>Native Barcoding Kit 24 V14</LIBRARY_CONSTRUCTION_PROTOCOL>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <OXFORD_NANOPORE>
      <INSTRUMENT_MODEL>MinION</INSTRUMENT_MODEL>
    </OXFORD_NANOPORE>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>DRS652091</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>DRA026241</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRX883256&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRX883256&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
  <EXPERIMENT_ATTRIBUTES>
    <EXPERIMENT_ATTRIBUTE>
      <TAG>ENA-STATUS-ID</TAG>
      <VALUE>4</VALUE>
    </EXPERIMENT_ATTRIBUTE>
  </EXPERIMENT_ATTRIBUTES>
</EXPERIMENT>
</EXPERIMENT_SET>

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="DRX883257" alias="DRX883257" center_name="University of Shizuoka" broker_name="DDBJ">
  <IDENTIFIERS>
    <PRIMARY_ID>DRX883257</PRIMARY_ID>
    <SUBMITTER_ID namespace="University of Shizuoka">DRX883257</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>DNBSEQ-T7 paired end sequencing of SAMD00899875</TITLE>
  <STUDY_REF accession="DRP017068" refcenter="HOKUDAI" refname="DRP017068">
    <IDENTIFIERS>
      <PRIMARY_ID>DRP017068</PRIMARY_ID>
      <EXTERNAL_ID label="BioProject ID" namespace="BioProject">PRJDB20581</EXTERNAL_ID>
      <SUBMITTER_ID namespace="HOKUDAI">DRP017068</SUBMITTER_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION/>
    <SAMPLE_DESCRIPTOR accession="DRS652091" refcenter="HOKUDAI" refname="DRS652091">
      <IDENTIFIERS>
        <PRIMARY_ID>DRS652091</PRIMARY_ID>
        <EXTERNAL_ID label="BioSample ID" namespace="BioSample">SAMD00899875</EXTERNAL_ID>
        <SUBMITTER_ID namespace="HOKUDAI">DRS652091</SUBMITTER_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME/>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM PCR</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
      <LIBRARY_CONSTRUCTION_PROTOCOL>MGIEasy FS DNA Library Prep Set</LIBRARY_CONSTRUCTION_PROTOCOL>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <DNBSEQ>
      <INSTRUMENT_MODEL>DNBSEQ-T7</INSTRUMENT_MODEL>
    </DNBSEQ>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>DRS652091</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>DRA026241</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRX883257&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRX883257&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
  <EXPERIMENT_ATTRIBUTES>
    <EXPERIMENT_ATTRIBUTE>
      <TAG>ENA-STATUS-ID</TAG>
      <VALUE>4</VALUE>
    </EXPERIMENT_ATTRIBUTE>
  </EXPERIMENT_ATTRIBUTES>
</EXPERIMENT>
</EXPERIMENT_SET>