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Allocrenothrix methanicaTs

Citation

Formal styling
Allocrenothrix methanicaTs Umezawa et al., 2026
Effective publication
Umezawa et al., 2026
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:gzovp6i4 (validated)
Canonical URL
https://seqco.de/i:55064

Nomenclature

Rank
Species
Syllabication
Me.tha.ni.ca.
Etymology
N.L. neut. n. methanum, methane; L. fem. adj. suff. -ica, pertaining to; N.L. fem. adj. methanica, pertaining to methane
Nomenclatural type
Genome sc|0005535 Ts
Reference strain
Strain sc|0040749: AF98 Lookup StrainInfo
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Microaerobic. Cells are rods 1.0-1.5 μm wide and 1.9-5.0 μm long and form multicellular filaments. Filaments are linear, rarely branched. Cells are connected by conjugation-like structures. No production of gonidia has been observed. The reference strain AF98 was isolated from iron-rich microbial mat material from wetlands regions of Oze National Park (Japan).
Classification
Bacteria » Pseudomonadota » Gammaproteobacteria » Methylococcales » Methylococcaceae » Allocrenothrix » Allocrenothrix methanicaTs
Parent
Allocrenothrix

Genomics

Accession
NCBI Assembly: GCA_055396535.1 [NCBI | EMBL]
Cultures
Strain sc|0040749
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 99.1%
  • Contamination: 1.9%
  • Quality: 89.6
Ribosomal and transfer RNA genes
  • 3 16S rRNAs (up to 100.0%)
  • 3 23S rRNAs (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
62.0 ×
Source
Other features
  • G+C Content: 42.21%
  • Coding Density: 89.15%
  • Codon Table: 11
  • N50: 3,722,389 bp
  • Contigs: 9
  • Largest Contig: 3,722,389 bp
  • Assembly Length: 4,134,542 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
See additional details
Last modified 21 days ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
9 months ago and claimed 9 months ago by Umezawa, Kazuhiro
Submitted
9 months ago by Umezawa, Kazuhiro
Curators
Endorsed
8 months ago by Rodriguez-R, Luis Miguel
Validated
17 days ago by St. John, Emily
Date of priority
2026-10-19 12:03 AM (UTC)

Publications
2

Citation Title
Umezawa et al., 2026, The ISME Journal Isolation of Allocrenothrix methanica reveals distinct ecophysiologies of filamentous methanotrophs and adaptations to O2 limitation
Effective publication
Umezawa et al., 2025, Isolation of Crenothrix bacteria reveals the distinct ecophysiologies of filamentous methanotrophs and adaptations to redox stress


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seqco.de/r:gzovp6i4