Genome sc|0005548


Name

Not registered

Database

NCBI Assembly

Accession

PRJEB100972

Marked for deletion

This genome is currently not registered as the nomenclatural type or the reference genome of any names in the Registry, and it will be purged from the database soon unless it is linked to a name

Genomics

Accession
NCBI Assembly:PRJEB100972
Cultures
Strain sc|0041592
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 0.53%
  • Quality: 97.35
Sequencing depth
195.0 ×
Source
Other features
  • G+C Content: 67.9%
Submitter comments
Isolated sampled for DNA extraction (Cetyltrimethylammonium bromide method) and subsequent whole genome sequencing using an Oxford Nanopore Technologies (ONT) MinION Mk1B device and R10.4 flow cells (FLO-MIN114) and the ONT Rapid Barcoding Kit with an added Long Fragment Buffer. Sequencing quality was high (Q20+ 91.7%, Q30+ 85.7%), and average sequencing depth 195. Initial screening found that this sequence was not compatible with Mtb. This sequence was then analysed with the Genome Taxonomy database (GTDB, release 226) and uploaded to the Genome-to-Genome distance calculator on the Type (Strain) Genome Server (TYGS). In both cases, the sequence was assigned as a new species with placement in the genus Nocardia.
Automated checks
Failed: Cannot find ncbi:assembly:PRJEB100972

Last modified about 15 hours ago


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