JSON

Genome sc|0005555

Name

Not registered

Database

NCBI Assembly

Accession

GCF_977089955.1

Marked for deletion

This genome is currently not registered as the nomenclatural type or the reference genome of any names in the Registry, and it will be purged from the database soon unless it is linked to a name

Genomics

Accession
NCBI Assembly:GCF_977089955.1
Cultures
Strain sc|0041593
Type
Single-Cell Amplified Genome (SAG)
Estimated Quality Metrics
  • Completeness: 1.0% (automated estimate: 99.1%)
  • Contamination: 1.0% (automated estimate: 6.6%)
  • Quality: -4.0 (automated estimate: 66.1)
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 1.0%) (automated estimate: 2)
  • 1 23S rRNA (up to 1.0%) (automated estimate: 2)
  • tRNAs for 1 amino acid (automated estimate: 20)
Sequencing depth
196.0 ×
Source
Other features
  • G+C Content: 67.9% (automated estimate: 67.91%)
  • Coding Density: 88.34%
  • Codon Table: 11
  • N50: 6,369,194 bp
  • Contigs: 2
  • Largest Contig: 6,369,194 bp
  • Assembly Length: 6,373,519 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Assembly statistics including G+C content and sequencing depth were computed with in-house tools. Completeness and contamination were assessed with CheckM2 v1.1.0.
Automated checks
Complete
Edit genome data
Last modified 18 days ago

Sample Metadata

Date
Not detected
Location
Not detected
Toponym
Not detected
Environment
Not detected
Other
Not detected
Package
Not detected
All retrieved samples
No BioSample metadata was found associated to this genome.
Metadata retrieved 18 days ago


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