JSON

Genome sc|0005565

Name

Not registered

Database

NCBI Assembly

Accession

JAPMLR000000000

Marked for deletion

This genome is currently not registered as the nomenclatural type or the reference genome of any names in the Registry, and it will be purged from the database soon unless it is linked to a name

Genomics

Accession
NCBI Assembly:JAPMLR000000000
Cultures
Strain sc|0041611
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 1.1%
  • Quality: 94.5
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 99.7%)
  • 1 23S rRNA (up to 99.3%)
  • tRNAs for 21 amino acids
Sequencing depth
500.0 ×
Source
Other features
  • G+C Content: 64.1%
Submitter comments
Completeness and contamination of the genome data are evaluated using CheckM (v1.2.2). The DNA G+C content was computed using an online ANI calculator available on the EzBioCloud web server (http://www.ezbiocloud.net/tools/ani). Through barrnap (v0.9) tool, 16S rRNA gene sequences is extracted from the genome, followed by chimera checking with VSEARCH (v2.30.4).  Ribosomal RNA (rRNA) and transfer RNA (tRNA) genes are identified and annotated using Prokka with default parameters.
Automated checks
Failed: Cannot find ncbi:assembly:JAPMLR000000000
Edit genome data
Last modified 17 minutes ago

Sample Metadata

BioSample entries
Date
Collection Date: 2018-08-01
Location
Not detected
Toponym
Geo Loc Name: China:Yunnan
Environment
Sample Type: Single cell
Isolation Source: lake water
Other
Not detected
Package
Not detected
All retrieved samples
Metadata retrieved about 13 hours ago


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