Keywords: GSC:MIxS;MIMS:6.0

BioSample Accession(s)

SRS19744697, SAMN38608393

Sample nr

25

collection_date

2021-04-10

depth

0-50

elev

225

env_broad_scale

Limestone cave [ENVO:01000359]

env_local_scale

Shades of Death, Deep, sediment C

env_medium

Soil [ENVO:00001998]

geo_loc_name

Australia: Victoria

isolate

M3-CC-SC

lat_lon

37.40591 S 148.21114 E

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX22757147" alias="SD8037" center_name="SUB13989299" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX22757147</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB13989299">SD8037</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Metagenome of an aerated cave</TITLE>
  <STUDY_REF accession="SRP475884">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP475884</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB13989299">bp0</SUBMITTER_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>Nextera XT DNA Sample Preparation Kit, paired-end sequencing (2  150 bp)</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS19744697">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS19744697</PRIMARY_ID>
        <SUBMITTER_ID namespace="pda|sean.bay1@monash.edu">SD8037</SUBMITTER_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>SD8037</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS19744697</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA1762945</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX22757147&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX22757147&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
  <EXPERIMENT_ATTRIBUTES>
    <EXPERIMENT_ATTRIBUTE>
      <TAG>ENA-STATUS-ID</TAG>
      <VALUE>4</VALUE>
    </EXPERIMENT_ATTRIBUTE>
  </EXPERIMENT_ATTRIBUTES>
</EXPERIMENT>
</EXPERIMENT_SET>