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Methyloligotropha calcicolaTs

Citation

Formal styling
Methyloligotropha calcicolaTs Bay et al., 2025 (priority 2026)
Effective publication
Bay et al., 2025
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:d_am3p8c (validated)
Canonical URL
https://seqco.de/i:55811

Nomenclature

Rank
Species
Syllabication
cal.ci'co.la
Etymology
L. fem. n. calx, chalk ; L. fem. suff. -cola, dweller, inhabitant; N.L. fem. n. calcicola, dweller of the limestone cave
Nomenclatural type
NCBI Assembly: GCA_050740455.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Putative atmospheric methanotroph inhabiting limestone caves
Classification
Bacteria » Pseudomonadota » Gammaproteobacteria » Methyloligotrophales » Methyloligotrophaceae » Methyloligotropha » Methyloligotropha calcicolaTs
Parent
Methyloligotropha assigned in Bay et al., 2025

Genomics

Accession
NCBI Assembly:GCA_050740455.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 99.1%
  • Contamination: 1.9%
  • Quality: 89.6
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 19 amino acids
Source
Other features
  • G+C Content: 59.94%
  • Coding Density: 86.4%
  • Codon Table: 11
  • N50: 40,277 bp
  • Contigs: 130
  • Largest Contig: 133,518 bp
  • Assembly Length: 3,625,199 bp
  • Ambiguous Assembly Fraction: 0.039%
Automated checks
Complete
See additional details
Last modified 1 day ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
4 months ago and claimed 4 months ago by Knudsen, Kalinka
Submitted
7 days ago by Knudsen, Kalinka
Curators
Validated
1 day ago by Rodriguez-R, Luis M
Date of priority
2026-06-16 06:48 AM (UTC)

Publications
1

Citation Title
Bay et al., 2025, Nature Communications Microbial aerotrophy enables continuous primary production in diverse cave ecosystems
Effective publication
Assigned this taxon


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  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license
seqco.de/r:d_am3p8c