Genome sc|0000006


Database

NCBI Assembly

Accession

GCA_021323375.2

Genomics

Accession
NCBI Assembly:GCA_021323375.2
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 98.06%
  • Contamination: 0.49%
  • Quality: 95.61
Ribosomal and transfer RNA genes
  • 2 16S rRNAs (up to 100.0%)
  • 2 23S rRNAs (up to 51.0%)
  • tRNAs for 19 amino acids
Sequencing depth
12.0 ×
Source
Other features
  • G+C Content: 52.0%
  • Coding Density: 88.92%
  • Codon Table: 11
  • N50: 86,582 bp
  • Contigs: 27
  • Largest Contig: 149,570 bp
  • Assembly Length: 1,277,965 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2016-03-29
Location
Lat Lon: 40.662186 N 119.366729 W
Toponym
Geo Loc Name: USA: Great Boiling Spring, Gerlach, Nevada
Environment
Isolation Source: enrichment culture; in situ ammonia-fiber explosion-treated corn stover incubated for 6 months in hot spring
Env Broad Scale: biome [ENVO:00000428]|aquatic biome [ENVO:00002030]
Env Local Scale: hot spring [ENVO:00000051]
Env Medium: enrichment culturing unit [ENVO:01001818]
Other
Ph: 7.15
Depth: 0
Temp: 86.5
Package
Ncbi Submission Package: MIMS.me.water.5.0
Biosamplemodel: MIGS/MIMS/MIMARKS.water
All retrieved samples

Metadata retrieved 5 months ago


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