JSON

Genome sc|0000060

Name

Polarisedimenticola svalbardensisTs

Database

NCBI Assembly

Accession

GCA_014764515.1

Genomics

Accession
NCBI Assembly:GCA_014764515.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 4.9%
  • Quality: 75.5
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 0 23S rRNAs
  • tRNAs for 19 amino acids
Source
Other features
  • G+C Content: 62.2%
  • Coding Density: 94.39%
  • Codon Table: 11
  • N50: 48,043 bp
  • Contigs: 180
  • Largest Contig: 161,849 bp
  • Assembly Length: 3,688,075 bp
  • Ambiguous Assembly Fraction: 0.079%
Submitter comments
The indicated completeness and contamination is based on CheckM2  https://gtdb.ecogenomic.org/genome?gid=GCA_014764515.1
Note that CheckM estimates the contamination to be 6.0%
Automated checks
Complete
Last modified 4 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2016-08
Location
Lat Lon: 77° 19′ 12″ N, 15° 23′ 24″ E
View map of sampling locations
Toponym
Geo Loc Name: Svalbard: Van Kuelenfjorden
Environment
Sample Type: metagenomic assembly
Isolation Source: marine sediment • marine sediment station AC
Other
Not detected
Package
Ncbi Submission Package: Microbe.1.0 • Metagenome.environmental.1.0
Biosamplemodel: Microbe, viral or environmental • Metagenome or environmental
All retrieved samples
Metadata retrieved 4 months ago


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