BioSample Accession(s)

SAMN15691666, ERS22810148

isolate

MAG AM4

NCBI submission package

Microbe.1.0

lat lon

77.32 N 15.39 E

organism

Candidatus Polarisedimenticola svalbardensis

collection date

2016-08

isolation source

marine sediment

geo loc name

Svalbard: Van Kuelenfjorden

metagenomic

1

derived-from

This BioSample is a metagenomic assembly obtained from the marine sediment metagenome BioSample: SAMN10372307

environmental sample

1

metagenome source

marine sediment metagenome

sample-type

metagenomic assembly

BioSampleModel

Microbe, viral or environmental

ENA-FIRST-PUBLIC

2020-08-01

ENA-LAST-UPDATE

2024-06-23

AC metagenome 18 cm

BioSample Accession(s)

SAMN10372307, SRS4015703

Station

AC

Fjord

Van Keulenfjorden

collection_date

2016-08

INSDC secondary accession

SRS4015703

NCBI submission package

Metagenome.environmental.1.0

organism

marine sediment metagenome

geo_loc_name

Svalbard: Van Kuelenfjorden

lat_lon

77.32 N 15.39 E

samp_collect_device

HAPs corer

isolation_source

marine sediment station AC

BioSampleModel

Metagenome or environmental

ENA-FIRST-PUBLIC

2019-12-02

ENA-LAST-UPDATE

2022-07-15

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX4978046" alias="AC_metagenome_HiSeq" center_name="SUB4740677" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX4978046</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB4740677">AC_metagenome_HiSeq</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Metagenomic sequencing of Van Keulenfjorden, Svalbard: sediment 18 cm station AC</TITLE>
  <STUDY_REF accession="SRP163645">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP163645</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA493859</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>DNA extracted from 18 cm below the seafloor at site AC in Van Keulenfjorden was sequenced.</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS4015703">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS4015703</PRIMARY_ID>
        <SUBMITTER_ID namespace="pda|jbuongiorno">AC Metagenome 18 cm</SUBMITTER_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>AC_metagenome_HiSeq</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGA</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina HiSeq 3000</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS4015703</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA802945</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX4978046&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX4978046&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
  <EXPERIMENT_ATTRIBUTES>
    <EXPERIMENT_ATTRIBUTE>
      <TAG>ENA-STATUS-ID</TAG>
      <VALUE>4</VALUE>
    </EXPERIMENT_ATTRIBUTE>
  </EXPERIMENT_ATTRIBUTES>
</EXPERIMENT>
</EXPERIMENT_SET>