JSONPDF

Polarisedimenticola svalbardensisTs

Citation

Formal styling
Polarisedimenticola svalbardensisTs Flieder et al., 2021 (priority 2025)
Effective publication
Flieder et al., 2021
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:qzix9uu9 (validated)
Canonical URL
https://seqco.de/i:23539

Nomenclature

Rank
Species
Syllabication
sval.bar.den'sis.
Etymology
N.L. masc. adj. svalbardensis, pertaining to Svalbard
Nomenclatural type
NCBI Assembly: GCA_014764515.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Polarisedimenticola svalbardensis MAG AM4 was recovered from marine sediment from Van Keulenfjorden, Svalbard (sampling date: July, 2016, location: latitude: 77°32.260’ N longitude: 15°39.434’ E, water depth: 55 m, sediment depth: 0-5 cm, sediment temperature: − 1.7°C to + 3°C). Genome-based metabolic reconstruction suggested this species is a facultative or aerotolerant anaerobe that degrades proteins and respires oxygen, nitrate, sulfur/polysulfide or metal-oxides.
Classification
Bacteria » Acidobacteriota » Polarisedimenticolia » Polarisedimenticolales » Polarisedimenticolaceae » Polarisedimenticola » Polarisedimenticola svalbardensisTs
Parent
Polarisedimenticola gtdb assigned in Flieder et al., 2021

Genomics

Accession
NCBI Assembly:GCA_014764515.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 4.9%
  • Quality: 75.5
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 0 23S rRNAs
  • tRNAs for 19 amino acids
Source
Other features
  • G+C Content: 62.2%
  • Coding Density: 94.39%
  • Codon Table: 11
  • N50: 48,043 bp
  • Contigs: 180
  • Largest Contig: 161,849 bp
  • Assembly Length: 3,688,075 bp
  • Ambiguous Assembly Fraction: 0.079%
Submitter comments
The indicated completeness and contamination is based on CheckM2  https://gtdb.ecogenomic.org/genome?gid=GCA_014764515.1
Note that CheckM estimates the contamination to be 6.0%
Automated checks
Complete
See additional details
Last modified 4 months ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
Over 3 years ago by Loy, Alexander
Submitted
4 months ago by Loy, Alexander
Curators
Validated
4 months ago by Rodriguez-R, Luis M
Date of priority
2025-07-24 08:15 AM (UTC)

Publications
1

Citation Title
Flieder et al., 2021, The ISME Journal Novel taxa of Acidobacteriota implicated in seafloor sulfur cycling
Effective publication
Assigned this taxon


© 2022-2025 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license
seqco.de/r:qzix9uu9