BioSample Accession(s)

SRS18235245, SAMN36379295

collection_date

2023

env_local_scale

Laboratory scale reactor

env_medium

Laboratory scale reactor

geo_loc_name

China: Guangzhou

isolate

SCUT-1

isolation_source

sequencing batch reactor

lat_lon

23.05 N 113.41 E

sample_type

metagenomic assembly

type-material

reference material of Candidatus Thiothrix phosphatis

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX20958855" alias="R2_11_21" center_name="SUB13654276" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX20958855</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB13654276">R2_11_21</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>metagenome of SBR</TITLE>
  <STUDY_REF accession="SRP448286">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP448286</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB13654276">bp0</SUBMITTER_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>Illumina TruSeq</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS18235245">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS18235245</PRIMARY_ID>
        <SUBMITTER_ID namespace="pda|xiexiaojing0813@gmail.com">SCUT-3</SUBMITTER_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>R2_11_21</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS18235245</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA1669885</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX20958855&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX20958855&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
  <EXPERIMENT_ATTRIBUTES>
    <EXPERIMENT_ATTRIBUTE>
      <TAG>ENA-STATUS</TAG>
      <VALUE>PUBLIC</VALUE>
    </EXPERIMENT_ATTRIBUTE>
  </EXPERIMENT_ATTRIBUTES>
</EXPERIMENT>
</EXPERIMENT_SET>

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX20958854" alias="R1_11_10" center_name="SUB13654276" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX20958854</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB13654276">R1_11_10</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>metagenome of SBR</TITLE>
  <STUDY_REF accession="SRP448286">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP448286</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB13654276">bp0</SUBMITTER_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>Illumina TruSeq</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS18235245">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS18235245</PRIMARY_ID>
        <SUBMITTER_ID namespace="pda|xiexiaojing0813@gmail.com">SCUT-3</SUBMITTER_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>R1_11_10</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS18235245</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA1669885</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX20958854&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX20958854&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
  <EXPERIMENT_ATTRIBUTES>
    <EXPERIMENT_ATTRIBUTE>
      <TAG>ENA-STATUS</TAG>
      <VALUE>PUBLIC</VALUE>
    </EXPERIMENT_ATTRIBUTE>
  </EXPERIMENT_ATTRIBUTES>
</EXPERIMENT>
</EXPERIMENT_SET>