Genome sc|0006085 Ts


Database

NCBI Assembly

Accession

GCA_985800395.1

Typification

Nomenclatural type of:

Genomics

Accession
NCBI Assembly: GCA_985800395.1 [NCBI | EMBL]
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 90.39%
  • Contamination: 0.56%
  • Quality: 87.59
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 63.0%)
  • 0 23S rRNAs
  • tRNAs for 15 amino acids
Sequencing depth
50.98 ×
Source
Other features
  • G+C Content: 37.84%
  • Coding Density: 82.71%
  • Codon Table: 11
  • N50: 38,788 bp
  • Contigs: 118
  • Largest Contig: 97,481 bp
  • Assembly Length: 2,816,889 bp
  • Ambiguous Assembly Fraction: 0.29%
Submitter comments
GC content was assessed with seqkit v2.8.2. Completeness and contamination were assess with checkm2 v1.1.0. Partial 16S was extracted with infernal v1.1.5. 
Automated checks
Complete

Last modified 3 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2021-06-06
Location
Geographic Location Latitude: 54° 15′ 26″ N
Geographic Location Longitude: 14° 19′ 44″ E
View map of sampling locations
Toponym
Geographic Location Country And Or Sea: Baltic Sea
Geographic Location Region And Locality: Odra Bank
Environment
Broad Scale Environmental Context: ocean biome [ENVO:01000048]
Local Environmental Context: marine benthic feature [ENVO:01000105]
Environmental Medium: marine sediment [ENVO:03000033]
Other
Depth: 0.14-0.15 • 0.09-0.1 • 0.06-0.07 • 0.02-0.03 • 0.01-0.02 • 0-0.01
Package
Ena Checklist: ERC000021
All retrieved samples

Metadata retrieved 3 months ago

Sequencing Experiments

ERR17389536
ERR17389537
ERR17389538
ERR17389539
ERR17389540
ERR17389541


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