marine archaeal group 1 strain BD31

BioSample Accession(s)

SAMN00016669, SRS084647

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX022633" alias="marine archaeal group 1 strain BD31 sequencing M221-4F-01-784  Experiment" center_name="JCVI" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX022633</PRIMARY_ID>
    <SUBMITTER_ID namespace="JCVI">marine archaeal group 1 strain BD31 sequencing M221-4F-01-784  Experiment</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>454 GS FLX Titanium sequencing</TITLE>
  <STUDY_REF accession="SRP002766" refname="marine archaeal group 1 strain BD31 sequencing M221-4F-01-784  Study">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP002766</PRIMARY_ID>
      <SUBMITTER_ID namespace="JCVI">marine archaeal group 1 strain BD31 sequencing M221-4F-01-784  Study</SUBMITTER_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>Marine Microbial Sequencing Project</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS084647" refname="marine archaeal group 1 strain BD31 sequencing M221-4F-01-784  Sample">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS084647</PRIMARY_ID>
        <SUBMITTER_ID namespace="JCVI">marine archaeal group 1 strain BD31 sequencing M221-4F-01-784  Sample</SUBMITTER_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>M221-4F-01-784 </LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <SINGLE/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>Adapter</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>5</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <LS454>
      <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
    </LS454>
  </PLATFORM>
  <PROCESSING/>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS084647</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA020788</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX022633&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX022633&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
  <EXPERIMENT_ATTRIBUTES>
    <EXPERIMENT_ATTRIBUTE>
      <TAG>ENA-STATUS</TAG>
      <VALUE>PUBLIC</VALUE>
    </EXPERIMENT_ATTRIBUTE>
  </EXPERIMENT_ATTRIBUTES>
</EXPERIMENT>
</EXPERIMENT_SET>