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Nitrosopumilus salarius

Citation

Formal styling
Nitrosopumilus salarius corrig. Mosier et al., 2012 (priority 2026)
Effective publication
Mosier et al., 2012
Corrigendum
Oren, 2017 from “Nitrosopumilus salaria” (sic)
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:ia0pl0ae (validated)
Canonical URL
https://seqco.de/i:149

Nomenclature

Rank
Species
Syllabication
sa.la'ri.us
Etymology
L. masc. adj. salarius, belonging to salt
Tags
classical econym geographic masculine
Nomenclatural type
Genome sc|0006254 Ts
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Classification
Archaea » Thermoproteota » Nitrososphaeria » Nitrosopumilales » Nitrosopumilaceae » Nitrosopumilus » Nitrosopumilus salarius
Parent
Nitrosopumilus gtdb
Alternative placements
Pseudonyms
  • Nitrosopumilus salaria (Original, corrected name)

Genomics

Accession
NCBI Assembly: GCA_000242875.3 [NCBI | EMBL]
Type
Enrichment Genome
Estimated Quality Metrics
  • Completeness: 90.5%
  • Contamination: 3.8%
  • Quality: 69.5
Ribosomal and transfer RNA genes
  • 2 16S rRNAs (up to 100.0%)
  • 3 23S rRNAs (up to 100.0%)
  • tRNAs for 19 amino acids
Sequencing depth
129.0 ×
Source
Other features
  • G+C Content: 33.79%
  • Coding Density: 89.5%
  • Codon Table: 11
  • N50: 28,330 bp
  • Contigs: 171
  • Largest Contig: 158,716 bp
  • Assembly Length: 1,572,957 bp
  • Ambiguous Assembly Fraction: 0.00025%
Submitter comments
Mosier et al. (2012) 'To estimate the extent of genome completeness, predicted protein sequences were searched against a set of 53 highly conserved core gene functions previously identified as universally present in all archaeal genomes based on COG annotations (13). A total of 48 of the 53 COGs (90.5%) were identified in “Ca. Nitrosopumilus salaria” BD31, indicating partial genome coverage.'
Automated checks
Complete
See additional details
Last modified about 2 months ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
Over 7 years ago and claimed 3 months ago by Rasmussen, Ejnar
Submitted
3 months ago by Rasmussen, Ejnar
Curators
Validated
19 days ago by St. John, Emily
Date of priority
2026-08-24 01:36 PM (UTC)

Publications
3

Citation Title
Oren et al., 2020, International Journal of Systematic and Evolutionary Microbiology Lists of names of prokaryotic Candidatus taxa
Oren, 2017, International Journal of Systematic and Evolutionary Microbiology A plea for linguistic accuracy – also for Candidatus taxa
Corrigendum
Mosier et al., 2012, Journal of Bacteriology Genome Sequence of “ Candidatus Nitrosopumilus salaria” BD31, an Ammonia-Oxidizing Archaeon from the San Francisco Bay Estuary
Effective publication


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