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Genome sc|0006292 Ts

Name

“Amulumruptor caecigallinarius”

Database

NCBI Assembly

Accession

GCA_004115465.1

Typification

Nomenclatural type of:

Genomics

Accession
NCBI Assembly: GCA_004115465.1 [NCBI | EMBL]
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 94.3%
  • Contamination: 1.9%
  • Quality: 84.8
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 76.0%)
  • 1 23S rRNA (up to 34.0%)
  • tRNAs for 20 amino acids
Sequencing depth
44.0 ×
Source
Other features
  • G+C Content: 51.86%
  • Coding Density: 89.62%
  • Codon Table: 11
  • N50: 41,191 bp
  • Contigs: 157
  • Largest Contig: 107,566 bp
  • Assembly Length: 2,377,265 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
Last modified about 12 hours ago

Sample Metadata

BioSample entries
Date
Collection Date: 2015-01-19
Location
Lat Lon: 22° 32′ 6.1″ N, 72° 58′ 15″ E
View map of sampling locations
Toponym
Geo Loc Name: India: Anand
Environment
Env Material: caecum content
Sample Type: metagenomic assembly
Isolation Source: pooled caecum metagenomic DNA from five Cobb400 and five Kadaknath chicken reared together under same contditions
Other
Host: Gallus gallus
Package
Not detected
All retrieved samples
Metadata retrieved about 12 hours ago


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