Genome sc|0000068

Genomics

Accession

NCBI Assembly:GCA_023539495.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 92.23%
• Contamination: 0.0%
• Quality: 92.23

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 2 23S rRNAs (up to 50.0%)
• tRNAs for 20 amino acids

Sequencing depth

27.0 ×

Source

• SRA: SRX13914732

Other features

• G+C Content: 51.6%
• Coding Density: 89.06%
• Codon Table: 11
• N50: 21,863 bp
• Contigs: 95
• Largest Contig: 59,083 bp
• Assembly Length: 1,315,737 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

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Last modified 2 months ago

Sample Metadata

BioSample entries

• BioSample: SAMN24468286

Date

Collection Date: 2019

Location

Lat Lon: 44.56963 N 110.86518 W

Toponym

Geo Loc Name: USA: Yellowstone National Park

Environment

Isolation Source: hot spring sediment from LGB-01 spring

Env Broad Scale: ENVO:00000051

Env Local Scale: ENVO:0000207

Env Medium: ENVO:0000207

Other

Depth: 1-20 cm

Package

Ncbi Submission Package: MIMS.me.sediment.6.0

Biosamplemodel: MIGS/MIMS/MIMARKS.sediment

All retrieved samples

• SAMN24468286: MIMS Environmental/Metagenome sample from hot springs metagenome

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Metadata retrieved 2 months ago