JSON

Genome sc|0006956 Ts

Name

“Smithella cisternae”

Database

NCBI Assembly

Accession

GCA_001683985.1

Typification

Nomenclatural type of:

Genomics

Accession
NCBI Assembly: GCA_001683985.1 [NCBI | EMBL]
Type
Enrichment Genome
Estimated Quality Metrics
  • Completeness: 98.1%
  • Contamination: 1.9%
  • Quality: 88.6
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 21 amino acids
Source
Other features
  • G+C Content: 42.79%
  • Coding Density: 85.58%
  • Codon Table: 11
  • N50: 35,699 bp
  • Contigs: 236
  • Largest Contig: 111,138 bp
  • Assembly Length: 2,753,163 bp
  • Ambiguous Assembly Fraction: 0.11%
Automated checks
Complete
Last modified about 4 hours ago

Sample Metadata

BioSample entries
Date
Collection Date: 2012-05-22
Location
Lat Lon: 38° 8′ 60″ N, 118° 30′ E
View map of sampling locations
Toponym
Geo Loc Name: China: Dongyin, Shandong Province, Shengli oilfield
Environment
Isolation Source: methanogenic consortium M82 from oily sludge
Other
Not detected
Package
Not detected
All retrieved samples
Metadata retrieved about 5 hours ago


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