Keywords: GSC:MIxS;MIMAG:5.0

BioSample Accession(s)

SAMN13894220

collection_date

not applicable

organism

Methanosarcinaceae archaeon

env_broad_scale

not applicable

metagenomic

1

derived-from

This BioSample is a metagenomic assembly obtained from the anaerobic digester metagenome reads deposited in SRR3184552, SRR3184553, SRR3184554, SRR3184648, SRR3184649, SRR3184675, SRR3184676, SRR3184677

environmental-sample

1

env_local_scale

not applicable

metagenome-source

anaerobic digester metagenome

isolate

AS23ysBPME_4

NCBI submission package

MIMAG.5.0

geo_loc_name

not applicable

env_medium

not applicable

lat_lon

not applicable

isolation_source

anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

sample-type

metagenomic assembly

BioSampleModel

MIMAG

ENA-FIRST-PUBLIC

2020-01-21

ENA-LAST-UPDATE

2020-04-06

BioSample Accession(s)

SAMN04486024, SRS1307948

collection_date

not collected

INSDC secondary accession

SRS1307948

NCBI submission package

Metagenome.environmental.1.0

organism

biogas fermenter metagenome

geo_loc_name

missing

GOLD Ecosystem Classification

Engineered | Bioreactor | Anaerobic | Digestate | Unclassified

lat_lon

52.0385 N 8.4956 E

isolation_source

missing

BioSampleModel

Metagenome or environmental

ENA-FIRST-PUBLIC

2016-02-10

ENA-LAST-UPDATE

2022-10-21

BioSample Accession(s)

SAMN04486025, SRS1307947

collection_date

not collected

INSDC secondary accession

SRS1307947

NCBI submission package

Metagenome.environmental.1.0

organism

biogas fermenter metagenome

geo_loc_name

missing

GOLD Ecosystem Classification

Engineered | Bioreactor | Anaerobic | Digestate | Unclassified

lat_lon

52.0385 N 8.4956 E

isolation_source

missing

BioSampleModel

Metagenome or environmental

ENA-FIRST-PUBLIC

2016-02-10

ENA-LAST-UPDATE

2022-10-21

BioSample Accession(s)

SAMN04486029, SRS1308042

collection_date

not collected

INSDC secondary accession

SRS1308042

NCBI submission package

Metagenome.environmental.1.0

organism

biogas fermenter metagenome

geo_loc_name

missing

GOLD Ecosystem Classification

Engineered | Bioreactor | Anaerobic | Digestate | Unclassified

lat_lon

52.0385 N 8.4956 E

isolation_source

missing

BioSampleModel

Metagenome or environmental

ENA-FIRST-PUBLIC

2016-02-10

ENA-LAST-UPDATE

2022-10-21

BioSample Accession(s)

SAMN04486023, SRS1308067

collection_date

not collected

INSDC secondary accession

SRS1308067

NCBI submission package

Metagenome.environmental.1.0

organism

biogas fermenter metagenome

geo_loc_name

missing

GOLD Ecosystem Classification

Engineered | Bioreactor | Anaerobic | Digestate | Unclassified

lat_lon

52.0385 N 8.4956 E

isolation_source

missing

BioSampleModel

Metagenome or environmental

ENA-FIRST-PUBLIC

2016-02-10

ENA-LAST-UPDATE

2022-10-21

BioSample Accession(s)

SAMN04486026, SRS1308068

collection_date

not collected

INSDC secondary accession

SRS1308068

NCBI submission package

Metagenome.environmental.1.0

organism

biogas fermenter metagenome

geo_loc_name

missing

GOLD Ecosystem Classification

Engineered | Bioreactor | Anaerobic | Digestate | Unclassified

lat_lon

52.0385 N 8.4956 E

isolation_source

missing

BioSampleModel

Metagenome or environmental

ENA-FIRST-PUBLIC

2016-02-10

ENA-LAST-UPDATE

2022-10-21

BioSample Accession(s)

SAMN04486027, SRS1308073

collection_date

not collected

INSDC secondary accession

SRS1308073

NCBI submission package

Metagenome.environmental.1.0

organism

biogas fermenter metagenome

geo_loc_name

missing

GOLD Ecosystem Classification

Engineered | Bioreactor | Anaerobic | Digestate | Unclassified

lat_lon

52.0385 N 8.4956 E

isolation_source

missing

BioSampleModel

Metagenome or environmental

ENA-FIRST-PUBLIC

2016-02-10

ENA-LAST-UPDATE

2022-10-21

BioSample Accession(s)

SAMN04486028, SRS1308072

collection_date

not collected

INSDC secondary accession

SRS1308072

NCBI submission package

Metagenome.environmental.1.0

organism

biogas fermenter metagenome

geo_loc_name

missing

GOLD Ecosystem Classification

Engineered | Bioreactor | Anaerobic | Digestate | Unclassified

lat_lon

52.0385 N 8.4956 E

isolation_source

missing

BioSampleModel

Metagenome or environmental

ENA-FIRST-PUBLIC

2016-02-10

ENA-LAST-UPDATE

2022-10-21

BioSample Accession(s)

SAMN04486030, SRS1308071

collection_date

not collected

INSDC secondary accession

SRS1308071

NCBI submission package

Metagenome.environmental.1.0

organism

biogas fermenter metagenome

geo_loc_name

missing

GOLD Ecosystem Classification

Engineered | Bioreactor | Anaerobic | Digestate | Unclassified

lat_lon

52.0385 N 8.4956 E

isolation_source

missing

BioSampleModel

Metagenome or environmental

ENA-FIRST-PUBLIC

2016-02-10

ENA-LAST-UPDATE

2022-10-21

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX1597946" alias="JGI-20089" center_name="JGI" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX1597946</PRIMARY_ID>
    <SUBMITTER_ID namespace="JGI">JGI-20089</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Illumina HiSeq 2500 paired end sequencing</TITLE>
  <STUDY_REF accession="SRP070720">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP070720</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA311380</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION/>
    <SAMPLE_DESCRIPTOR accession="SRS1307948">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS1307948</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN04486024</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>PBBH</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED NOMINAL_LENGTH="485000"/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>300</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>151</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS1307948</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA357208</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX1597946&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX1597946&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX1597947" alias="JGI-20094" center_name="JGI" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX1597947</PRIMARY_ID>
    <SUBMITTER_ID namespace="JGI">JGI-20094</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Illumina HiSeq 2000 paired end sequencing</TITLE>
  <STUDY_REF accession="SRP070719">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP070719</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA311379</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION/>
    <SAMPLE_DESCRIPTOR accession="SRS1307947">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS1307947</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN04486025</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>NWOB</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED NOMINAL_LENGTH="400000"/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>300</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>151</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS1307947</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA357209</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX1597947&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX1597947&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX1597948" alias="JGI-20079" center_name="JGI" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX1597948</PRIMARY_ID>
    <SUBMITTER_ID namespace="JGI">JGI-20079</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Illumina HiSeq 2500 paired end sequencing</TITLE>
  <STUDY_REF accession="SRP070722">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP070722</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA311382</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION/>
    <SAMPLE_DESCRIPTOR accession="SRS1308042">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS1308042</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN04486029</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>PBBO</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED NOMINAL_LENGTH="440000"/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>300</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>151</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS1308042</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA357211</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX1597948&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX1597948&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX1598042" alias="JGI-20084" center_name="JGI" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX1598042</PRIMARY_ID>
    <SUBMITTER_ID namespace="JGI">JGI-20084</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Illumina HiSeq 2500 paired end sequencing</TITLE>
  <STUDY_REF accession="SRP070724">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP070724</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA311381</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION/>
    <SAMPLE_DESCRIPTOR accession="SRS1308067">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS1308067</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN04486023</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>PBBP</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED NOMINAL_LENGTH="435000"/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>300</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>151</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS1308067</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA357213</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX1598042&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX1598042&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX1598043" alias="JGI-20099" center_name="JGI" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX1598043</PRIMARY_ID>
    <SUBMITTER_ID namespace="JGI">JGI-20099</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Illumina HiSeq 2500 paired end sequencing</TITLE>
  <STUDY_REF accession="SRP070725">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP070725</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA311378</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION/>
    <SAMPLE_DESCRIPTOR accession="SRS1308068">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS1308068</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN04486026</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>PBBS</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED NOMINAL_LENGTH="447000"/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>300</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>151</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS1308068</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA357214</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX1598043&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX1598043&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX1598072" alias="JGI-20104" center_name="JGI" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX1598072</PRIMARY_ID>
    <SUBMITTER_ID namespace="JGI">JGI-20104</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Illumina HiSeq 2500 paired end sequencing</TITLE>
  <STUDY_REF accession="SRP070729">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP070729</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA311377</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION/>
    <SAMPLE_DESCRIPTOR accession="SRS1308073">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS1308073</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN04486027</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>PBBN</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED NOMINAL_LENGTH="470000"/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>300</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>151</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS1308073</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA357221</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX1598072&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX1598072&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX1598073" alias="JGI-20109" center_name="JGI" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX1598073</PRIMARY_ID>
    <SUBMITTER_ID namespace="JGI">JGI-20109</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Illumina HiSeq 2500 paired end sequencing</TITLE>
  <STUDY_REF accession="SRP070728">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP070728</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA311376</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION/>
    <SAMPLE_DESCRIPTOR accession="SRS1308072">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS1308072</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN04486028</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>PBBC</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED NOMINAL_LENGTH="471000"/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>300</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>151</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS1308072</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA357222</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX1598073&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX1598073&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX1598074" alias="JGI-20114" center_name="JGI" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX1598074</PRIMARY_ID>
    <SUBMITTER_ID namespace="JGI">JGI-20114</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Illumina HiSeq 2500 paired end sequencing</TITLE>
  <STUDY_REF accession="SRP070727">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP070727</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA311383</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION/>
    <SAMPLE_DESCRIPTOR accession="SRS1308071">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS1308071</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN04486030</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>PBBG</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED NOMINAL_LENGTH="453000"/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>300</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>151</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS1308071</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA357223</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX1598074&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
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      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>