Genome sc|0000793

Genomics

Accession

NCBI Assembly:GCA_028278665.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 95.3%
• Contamination: 0.9%
• Quality: 90.8

Ribosomal and transfer RNA genes

• 0 16S rRNAs
• 0 23S rRNAs
• tRNAs for 19 amino acids

Sequencing depth

15.0 ×

Source

• BioSample: SAMN18721849
• BioSample: SAMN11333419
• BioSample: SAMN52587486

Other features

• G+C Content: 64.64%
• Coding Density: 89.74%
• Codon Table: 11
• N50: 31,040 bp
• Contigs: 122
• Largest Contig: 83,522 bp
• Assembly Length: 2,899,107 bp
• Ambiguous Assembly Fraction: 0.17%

Automated checks

Complete

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Last modified 8 days ago

Sample Metadata

BioSample entries

• BioSample: SAMN18721849
• BioSample: SAMN11333419
• BioSample: SAMN52587486

Date

Collection Date: 2014-01

Location

Lat Lon: 33° 0′ 36″ N, 35° 2′ 24″ E

View map of sampling locations

Toponym

Geo Loc Name: Israel:Achziv Nature Marine Reserve

Environment

Sample Type: metagenomic assembly

Isolation Source: coastal seawater

Env Broad Scale: rocky shore

Env Local Scale: coastal water

Env Medium: sea water

Other

Host: Petrosia ficiformis

Depth: 27.3 m

Package

Not detected

All retrieved samples

• SAMN18721849: MIMAG Metagenome-assembled Genome sample from Candidatus Rariloculus versatilis
• SAMN11333419: Metagenome or environmental sample from sponge metagenome
• SAMN52587486: sponge metagenome

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Metadata retrieved 8 days ago