Genome sc|0000795


Database

NCBI Assembly

Accession

GCA_028285795.1

Genomics

Accession
NCBI Assembly:GCA_028285795.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 83.84%
  • Contamination: 0.61%
  • Quality: 80.79
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 0 23S rRNAs
  • tRNAs for 19 amino acids
Sequencing depth
12.0 ×
Source
See all sources
Other features
  • G+C Content: 50.95%
  • Coding Density: 86.37%
  • Codon Table: 11
  • N50: 17,147 bp
  • Contigs: 223
  • Largest Contig: 73,931 bp
  • Assembly Length: 2,569,092 bp
  • Ambiguous Assembly Fraction: 0.00097%
Submitter comments
Completeness was estimated with CheckM, which like underestimates for divergent, symbiont clades
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2014-06
Location
Lat Lon: 18.816 S 147.633 E
Toponym
Geo Loc Name: Australia: Davies Reef, Great Barrier Reef
Environment
Sample Type: metagenomic assembly
Isolation Source: sponge tissue, time zero, i.e. control • sponge tissue time zero, sample 1 • sponge tissue time zero, sample 2 • sponge tissue time zero, sample 3
Env Broad Scale: coral reef [ENVO:00000150]
Env Local Scale: coral reef [ENVO:00000150]
Env Medium: sponge
Other
Host: Phyllospongia foliascens
Package
Biosamplemodel: MIMAG.host-associated • Metagenome or environmental
All retrieved samples

Metadata retrieved 5 months ago


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