Poriferihabitans thioversatilis^Ts

Citation

Formal styling

Poriferihabitans thioversatilis^Ts Nguyen et al., 2023 (valid 2024)

Effective publication

Nguyen et al., 2023

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:44vcemye (validated)

Canonical URL

https://seqco.de/i:32592

Nomenclature

Rank

Species

Syllabication

thi.o.ver.sa.ti'lis

Etymology

Gr. neut. n. theîon, sulphur; L. fem. adj. versatilis, versatile; N.L. fem. adj. thioversatilis, versatile sulfur metabolism

Nomenclatural type

NCBI Assembly: GCA_028285795.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

A sponge symbiont with a versatile sulfur metabolism

Notes

The calculated completeness of the type genome has been deemed an underestimation on the basis of its biology.

Classification

Bacteria » Pseudomonadota » Gammaproteobacteria » Arenicellales » Poriferihabitantaceae » Poriferihabitans » Poriferihabitans thioversatilis^Ts

Parent

Poriferihabitans gtdb

Genomics

Accession

NCBI Assembly:GCA_028285795.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 83.84%
• Contamination: 0.61%
• Quality: 80.79

Ribosomal and transfer RNA genes

• 0 16S rRNAs
• 0 23S rRNAs
• tRNAs for 19 amino acids

Sequencing depth

12.0 ×

Source

• BioSample: SAMN30287279
• BioSample: SAMN31806789
• And 2 more…

See all sources

Other features

• G+C Content: 50.95%
• Coding Density: 86.37%
• Codon Table: 11
• N50: 17,147 bp
• Contigs: 223
• Largest Contig: 73,931 bp
• Assembly Length: 2,569,092 bp
• Ambiguous Assembly Fraction: 0.00097%

Submitter comments

Completeness was estimated with CheckM, which like underestimates for divergent, symbiont clades

Automated checks

Complete

See additional details

Metadata

Outside links and data sources

• GTDB Genome: GCA_028285795.1
• GTDB Tree: s__Poriferihabitans thioversatilis
• Wikispecies: Poriferihabitans thioversatilis (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 9 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Thomas, Torsten about 1 year ago

Submitted by

Thomas, Torsten 10 months ago

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Endorsed by

Palmer, Marike 9 months ago

Validated by

Palmer, Marike 9 months ago

Date of priority

2024-02-01 10:13 PM (UTC)