Genome sc|0000080

Name

Regnicoccus frigidus

Database

INSDC Nucleotide

Accession

JAOANE000000000

Genomics

Accession

INSDC Nucleotide:JAOANE000000000

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

Completeness: 99.73%
Contamination: 0.09%
Quality: 99.28

Ribosomal and transfer RNA genes

1 16S rRNA (up to 100.0%)
0 23S rRNAs
tRNAs for 20 amino acids

Sequencing depth

22.0 ×

Source

Other features

G+C Content: 64.17%
Coding Density: 89.88%
Codon Table: 11
N50: 71,760 bp
Contigs: 64
Largest Contig: 295,825 bp
Assembly Length: 2,644,322 bp
Ambiguous Assembly Fraction: 0.0%

Submitter comments

Annotation by the IMG (Integrated Microbial Genomes) pipeline. Completeness and contamination estimates by CheckM v1.0.11.

Automated checks

Complete

Last modified over 1 year ago

Sample Metadata

BioSample entries

Date

Collection Date: 2014-07-02

Location

Lat Lon: 68° 28′ 21″ S, 78° 11′ 17″ E

View map of sampling locations

Toponym

Geo Loc Name: Antarctica: Ace Lake

Environment

Sample Type: metagenomic assembly

Isolation Source: saline lake

Env Broad Scale: aquatic biome [ENVO:00002030]

Env Local Scale: saline lake [ENVO:00000019]

Env Medium: saline water [ENVO:00002010]

Gold Ecosystem Classification: Environmental | Aquatic | Non-marine Saline and Alkaline | Saline | Unclassified

Other

Depth: 5m

Package

Ncbi Submission Package: MIMAG.water.6.0 • Metagenome.environmental.1.0

Biosamplemodel: MIMAG.water • Metagenome or environmental

All retrieved samples

Metadata retrieved over 1 year ago

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