Regnicoccus frigidus


Citation

Formal styling
Regnicoccus frigidus Panwar et al., 2022 (priority 2025)
Effective publication
Panwar et al., 2022
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:3vlm6qqf (validated)
Canonical URL
https://seqco.de/i:23579

Nomenclature

Rank
Species
Syllabication
fri'gi.dus
Etymology
L. masc. adj. frigidus, cold, referring to the cold environment
Nomenclatural type
INSDC Nucleotide: JAOANE000000000
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Cold-adapted planktonic cyanobacterium using aerobic oxygenic photoautotrophy (Calvin-Benson-Bassham cycle) in the light. Under dark conditions has possible aerobic heterotrophic metabolism (using exogenous sugars and glycerol); possible facultative anaerobic metabolism under dark and anoxic conditions (fermentation using stored glycogen coupled to evolution of H2). Carbon sources include: CO2, urea, cyanate, sugars, glycerol. Nitrogen sources include: nitrate, ammonia, urea, cyanate, amino acids, peptides, free cyanide, nitriles. Capable of glycogen storage. Possesses ABC transporters for urea, amino acids, and sugars, as well as other transporters for peptides, glycerol, nitrate/nitrite, and ammonium. Bacterial defense systems include a BREX type 1 system, a Retron anti-phage system and Type I restriction-modification.
Classification
Bacteria » Cyanobacteriota » Cyanophyceae » “Synechococcales” » Synechococcaceae » Regnicoccus » Regnicoccus frigidus
Parent
Regnicoccus gtdb assigned in Panwar et al., 2022

Genomics

Accession
INSDC Nucleotide:JAOANE000000000
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 99.73%
  • Contamination: 0.09%
  • Quality: 99.28
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 0 23S rRNAs
  • tRNAs for 20 amino acids
Sequencing depth
22.0 ×
Source
Other features
  • G+C Content: 64.17%
  • Coding Density: 89.88%
  • Codon Table: 11
  • N50: 71,760 bp
  • Contigs: 64
  • Largest Contig: 295,825 bp
  • Assembly Length: 2,644,322 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Annotation by the IMG (Integrated Microbial Genomes) pipeline. Completeness and contamination estimates by CheckM v1.0.11.
Automated checks
Complete

Last modified about 1 year ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
About 3 years ago by Allen, Michelle
Submitted
Over 2 years ago by Allen, Michelle
Curators
Endorsed
Over 2 years ago by Chuvochina, Maria
Validated
4 months ago by St. John, Emily
Date of priority
2025-08-17 11:27 AM (UTC)

Publications
1

Citation Title
Panwar et al., 2022, Microbiome Population structure of an Antarctic aquatic cyanobacterium
Effective publication
Assigned this taxon



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seqco.de/r:3vlm6qqf