JSON

Genome sc|0000807

Name

Calypsonella navitaeTs

Database

NCBI Assembly

Accession

GCA_035175045.1

Genomics

Accession
NCBI Assembly:GCA_035175045.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 98.84%
  • Contamination: 0.61%
  • Quality: 95.79
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 95.7%)
  • 1 23S rRNA (up to 55.0%)
  • tRNAs for 20 amino acids
Sequencing depth
53.43 ×
Source
Other features
  • G+C Content: 62.4%
  • Coding Density: 91.32%
  • Codon Table: 11
  • N50: 50,176 bp
  • Contigs: 65
  • Largest Contig: 267,429 bp
  • Assembly Length: 1,604,348 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Completeness and contamination were estimated using CheckM2. Ribosomal and transfer RNAs were detected with PGAP. 23S rRNA gene completeness was estimated using the average 23S rRNA gene length of four related species: Aeropyrum pernix, Aeropyrum camini, Acidilobus saccharovorans and Caldisphaera lagunensis.
Automated checks
Complete

Sample Metadata

BioSample entries
Date
Collection Date: 2015-04-29
Location
Lat Lon: 22.1802 S 176.6012 W
Toponym
Geo Loc Name: Pacific Ocean: Mariner vent site
Environment
Isolation Source: hydrothermal vent deposit Mariner 2
Other
Not detected
Package
Ncbi Submission Package: Metagenome.environmental.1.0
Biosamplemodel: Metagenome or environmental
All retrieved samples
Metadata retrieved 1 day ago

Sequencing Experiments

Metagenome sequence data from sample J2-816-3-R1-2 (M2)


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license