Calypsonella navitaeTs


Citation

Formal styling
Calypsonella navitaeTs St. John, Reysenbach, 2024
Effective publication
St. John, Reysenbach, 2024
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:kxlu-6m0 (validated)
Cannonical URL
https://seqco.de/i:32612

Nomenclature

Rank
Species
Syllabication
na'vi.tae
Etymology
L. gen. n. navitae, of a mariner, sailor; referring both to the marine habitat and to the Mariner deep sea vent along the Eastern Lau Spreading Center
Nomenclatural type
NCBI Assembly: GCA_035175045.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
The MAG belonging to this species was assembled and binned from a hydrothermal metagenome from the ‘Toilet Bowl’ at Mariner deep sea vent field along the Valu Fa Ridge in the Lau Basin. The genome consists of 65 contigs totaling 1,604,348 bp in length, with a GC content of 62.4%. It encodes a near-complete 16S rRNA gene (1403 bp), a partial 23S rRNA gene, and tRNA genes for all 20 standard amino acids. Analysis with CheckM2 suggests this MAG is 98.84% complete with 0.61% contamination. Phylogenomic reconstruction places this species within Calypsonella. Based on functional gene analysis, this lineage is likely a non-motile anaerobe that degrades protein-rich carbon sources, and it likely grows best at ~91°C.
Classification
Archaea » Thermoproteota » Thermoprotei » Acidilobales » Acidilobaceae » Calypsonella » Calypsonella navitaeTs
Parent
Calypsonella

Genomics

Accession
NCBI Assembly:GCA_035175045.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 98.84%
  • Contamination: 0.61%
  • Quality: 95.79
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 95.7%)
  • 1 23S rRNA (up to 55.0%)
  • tRNAs for 20 amino acids
Sequencing depth
53.43 ×
Source
Other features
  • G+C Content: 62.4%
  • Coding Density: 91.32%
  • Codon Table: 11
  • N50: 50,176 bp
  • Contigs: 65
  • Largest Contig: 267,429 bp
  • Assembly Length: 1,604,348 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Completeness and contamination were estimated using CheckM2. Ribosomal and transfer RNAs were detected with PGAP. 23S rRNA gene completeness was estimated using the average 23S rRNA gene length of four related species: Aeropyrum pernix, Aeropyrum camini, Acidilobus saccharovorans and Caldisphaera lagunensis.
Automated checks
Complete
See additional details

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
St. John, Emily 9 months ago
Submitted by
St. John, Emily 2 months ago
Curators
Endorsed by
Palmer, Marike 2 months ago
Validated by
Palmer, Marike 13 days ago

Publications
1

Citation Title
St. John, Reysenbach, 2024, Systematic and Applied Microbiology Genomic comparison of deep-sea hydrothermal genera related to Aeropyrum, Thermodiscus and Caldisphaera, and proposed emended description of the family Acidilobaceae
Effective publication



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