SeqCode Registry
cognitis nomina
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Genomes
sc|0000815
JSON
Genome sc|0000815
Name
Vibrio fluminensis
Database
NCBI Assembly
Accession
GCA_015278125.1
Genomics
Accession
NCBI Assembly:
GCA_015278125.1
Type
Isolate Genome
Estimated Quality Metrics
Completeness:
100.0%
Contamination:
1.9%
Quality:
90.5
Ribosomal and transfer RNA genes
2 16S rRNAs (up to 55.0%)
1 23S rRNA (up to 100.0%)
tRNAs for 20 amino acids
Sequencing depth
654.0 ×
Source
BioSample: SAMN16595172
Other features
G+C Content:
44.0%
Coding Density:
86.59%
Codon Table:
11
N50:
111,428 bp
Contigs:
102
Largest Contig:
603,146 bp
Assembly Length:
4,854,211 bp
Ambiguous Assembly Fraction:
0.0%
Automated checks
Complete
Last modified
8 days ago
Sample Metadata
BioSample entries
BioSample: SAMN16595172
Date
Collection Date:
2016-09-10
Location
Lat Lon:
22.58 S 42.02 W
Toponym
Geo Loc Name:
Brazil: Rio de Janeiro, Arraial do Cabo
Environment
Sample Type:
cell culture
Isolation Source:
skin
Env Broad Scale:
ocean
Other
Host:
Sphoeroides spengleri
Package
Ncbi Submission Package:
Microbe.1.0
Biosamplemodel:
Microbe, viral or environmental
All retrieved samples
SAMN16595172
: Microbe sample from Vibrio fluminensis
Metadata retrieved
8 days ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN16595172
×
Metadata retrieved using the EBI API
BioSample Accession(s)
SAMN16595172
strain
A621
collection_date
2016-09-10
type-material
type strain of Vibrio fluminensis
NCBI submission package
Microbe.1.0
organism
Vibrio fluminensis
env_broad_scale
ocean
host
Sphoeroides spengleri
geo_loc_name
Brazil: Rio de Janeiro, Arraial do Cabo
lat_lon
22.58 S 42.02 W
sample_type
cell culture
isolation_source
skin
BioSampleModel
Microbe, viral or environmental
ENA-FIRST-PUBLIC
2020-10-29
ENA-LAST-UPDATE
2023-06-02
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