JSON

Genome sc|0000815

Name

Vibrio fluminensis

Database

NCBI Assembly

Accession

GCA_015278125.1

Genomics

Accession
NCBI Assembly:GCA_015278125.1
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 1.9%
  • Quality: 90.5
Ribosomal and transfer RNA genes
  • 2 16S rRNAs (up to 55.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
654.0 ×
Source
Other features
  • G+C Content: 44.0%
  • Coding Density: 86.59%
  • Codon Table: 11
  • N50: 111,428 bp
  • Contigs: 102
  • Largest Contig: 603,146 bp
  • Assembly Length: 4,854,211 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2016-09-10
Location
Lat Lon: 22.58 S 42.02 W
Toponym
Geo Loc Name: Brazil: Rio de Janeiro, Arraial do Cabo
Environment
Sample Type: cell culture
Isolation Source: skin
Env Broad Scale: ocean
Other
Host: Sphoeroides spengleri
Package
Ncbi Submission Package: Microbe.1.0
Biosamplemodel: Microbe, viral or environmental
All retrieved samples
Metadata retrieved 10 months ago


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license