Vibrio fluminensis


Citation

Formal styling
Vibrio fluminensis de Azevedo et al., 2022 (valid 2023)
Effective publication
de Azevedo et al., 2022
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:m0elhjia (validated)
Cannonical URL
https://seqco.de/i:32635

Nomenclature

Rank
Species
Syllabication
flu.mi'nen.sis.
Etymology
N.L. masc. adj. fluminensis, (from Portuguese adj.) pertaining to the Fluminense region in which the host is commonly found
Nomenclatural type
NCBI Assembly: GCA_015278125.1
Reference strain
A621 = CBAS 741 = CAIM 1945 = CCMR 150
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Gram negative motile rods, presenting green circular colonies on TCBS. It was obtained from the skin of the sharpnose pufferfish Canthigaster figueredoi (Tetraodontidae Family), collected in Arraial do Cabo, located in the Rio de Janeiro region, Brazil. Optimum growth occurs at 20-28 °C in the presence of 3% NaCl.
Classification
Bacteria » Pseudomonadota » Gammaproteobacteria » Vibrionales » Vibrionaceae » Vibrio » Vibrio fluminensis
Parent
Vibrio ncbigtdb

Genomics

Accession
NCBI Assembly:GCA_015278125.1
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 1.9%
  • Quality: 90.5
Ribosomal and transfer RNA genes
  • 2 16S rRNAs (up to 55.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
654.0 ×
Source
Other features
  • G+C Content: 44.0%
  • Coding Density: 86.59%
  • Codon Table: 11
  • N50: 111,428 bp
  • Contigs: 102
  • Largest Contig: 603,146 bp
  • Assembly Length: 4,854,211 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
See additional details

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Kaufmann, Hannah 9 months ago
Submitted by
Kaufmann, Hannah 6 months ago
Curators
Endorsed by
Palmer, Marike 5 months ago
Validated by
Palmer, Marike 5 months ago

Publications
1

Citation Title
de Azevedo et al., 2022, Archives of Microbiology Vibrio fluminensis sp. nov. isolated from the skin of Southern Atlantic sharpnose-pufferfish (Canthigaster figueiredoi)
Effective publication



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