Vibrio fluminensis

Citation

Formal styling

Vibrio fluminensis de Azevedo et al., 2022 (valid 2023)

Effective publication

de Azevedo et al., 2022

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:m0elhjia (validated)

Canonical URL

https://seqco.de/i:32635

Nomenclature

Rank

Species

Syllabication

flu.mi'nen.sis.

Etymology

N.L. masc. adj. fluminensis, (from Portuguese adj.) pertaining to the Fluminense region in which the host is commonly found

Nomenclatural type

NCBI Assembly: GCA_015278125.1

Reference strain

A621 = CBAS 741 = CAIM 1945 = CCMR 150

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

Gram negative motile rods, presenting green circular colonies on TCBS. It was obtained from the skin of the sharpnose pufferfish Canthigaster figueredoi (Tetraodontidae Family), collected in Arraial do Cabo, located in the Rio de Janeiro region, Brazil. Optimum growth occurs at 20-28 °C in the presence of 3% NaCl.

Classification

Bacteria » Pseudomonadota » Gammaproteobacteria » Vibrionales » Vibrionaceae » Vibrio » Vibrio fluminensis

Parent

Vibrio ncbigtdb

Genomics

Accession

NCBI Assembly:GCA_015278125.1

Type

Isolate Genome

Estimated Quality Metrics

• Completeness: 100.0%
• Contamination: 1.9%
• Quality: 90.5

Ribosomal and transfer RNA genes

• 2 16S rRNAs (up to 55.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

654.0 ×

Source

• BioSample: SAMN16595172

Other features

• G+C Content: 44.0%
• Coding Density: 86.59%
• Codon Table: 11
• N50: 111,428 bp
• Contigs: 102
• Largest Contig: 603,146 bp
• Assembly Length: 4,854,211 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

See additional details

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Last modified 10 days ago

Metadata

Outside links and data sources

• NCBI Taxonomy: 2783614
• GTDB Genome: GCA_015278125.1
• GTDB Tree: s__Vibrio fluminensis
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Vibrio fluminensis (see reference source)

Search sequences

• Seach in NCBI Nucleotide
• NCBI Genomes table

Local history

• This name was last modified 10 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Kaufmann, Hannah about 1 year ago

Submitted by

Kaufmann, Hannah 12 months ago

Curators

• Rodriguez-R, Luis M
• Palmer, Marike (nomenclature)

Endorsed by

Palmer, Marike 11 months ago

Validated by

Palmer, Marike 11 months ago

Date of priority

2023-12-08 12:19 AM (UTC)