Genome sc|0000816


Database

NCBI Assembly

Accession

GCA_003350295.1

Genomics

Accession
NCBI Assembly:GCA_003350295.1
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 1.9%
  • Quality: 90.5
Ribosomal and transfer RNA genes
  • 3 16S rRNAs (up to 53.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
145.0 ×
Source
Other features
  • G+C Content: 42.5%
  • Coding Density: 87.69%
  • Codon Table: 11
  • N50: 183,738 bp
  • Contigs: 41
  • Largest Contig: 460,678 bp
  • Assembly Length: 4,360,861 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Last modified 22 days ago

Sample Metadata

BioSample entries
Date
Collection Date: 2016-09-10
Location
Not detected
Toponym
Geo Loc Name: Brazil: Arraial do Cabo
Environment
Sample Type: cell culture
Env Biome: ocean
Isolation Source: skin
Other
Host: Tetraodontidae
Package
Ncbi Submission Package: Microbe.1.0
Biosamplemodel: Microbe, viral or environmental
All retrieved samples

Metadata retrieved 22 days ago

Sequencing Experiments

WGS of Vibrio tetraodonis: isolated from fish skin


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license