Genome sc|0000850


Database

NCBI Assembly

Accession

GCA_031528575.1

Genomics

Accession
NCBI Assembly:GCA_031528575.1
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 97.13%
  • Contamination: 0.88%
  • Quality: 92.73
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
61.0 ×
Source
Other features
  • G+C Content: 46.7%
  • Coding Density: 79.58%
  • Codon Table: 11
  • N50: 37,409 bp
  • Contigs: 201
  • Largest Contig: 102,874 bp
  • Assembly Length: 4,041,637 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Completeness and contamination were assessed with CheckM v1.2.2
rRNA genes were detected via annotation with Bakta v1.7.0
Automated checks
Complete

Last modified about 1 month ago

Sample Metadata

BioSample entries
Date
Collection Date: 2023-07
Location
Lat Lon: 18.604528 S 146.490083 E
Toponym
Geo Loc Name: Australia: Orpheus Island
Environment
Env Broad Scale: coral reef
Env Local Scale: NA
Env Medium: coral tissue
Other
Host: Pocillopora acuta
Isol Growth Condt: NA
Package
Ncbi Submission Package: MIGS.ba.host-associated.6.0
Biosamplemodel: MIGS/MIMS/MIMARKS.host-associated
All retrieved samples

Metadata retrieved about 1 month ago

Sequencing Experiments

Raw reads for whole-genome sequencing of Pocillopora acuta-associated bacteria


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