Genome sc|0000850


Database

NCBI Assembly

Accession

GCA_031528575.1

Genomics

Accession
NCBI Assembly:GCA_031528575.1
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 97.13%
  • Contamination: 0.88%
  • Quality: 92.73
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
61.0 ×
Source
Other features
  • G+C Content: 46.7%
  • Coding Density: 79.58%
  • Codon Table: 11
  • N50: 37,409 bp
  • Contigs: 201
  • Largest Contig: 102,874 bp
  • Assembly Length: 4,041,637 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Completeness and contamination were assessed with CheckM v1.2.2
rRNA genes were detected via annotation with Bakta v1.7.0
Automated checks
Complete

Last modified 10 days ago

Sample Metadata

BioSample entries
Date
Collection Date: 2023-07
Location
Lat Lon: 18.604528 S 146.490083 E
Toponym
Geo Loc Name: Australia: Orpheus Island
Environment
Env Broad Scale: coral reef
Env Local Scale: NA
Env Medium: coral tissue
Other
Host: Pocillopora acuta
Package
Ncbi Submission Package: MIGS.ba.host-associated.6.0
Biosamplemodel: MIGS/MIMS/MIMARKS.host-associated
All retrieved samples

Metadata retrieved 10 days ago

Sequencing Experiments

Raw reads for whole-genome sequencing of Pocillopora acuta-associated bacteria


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