Sororendozoicomonas aggregataTs


Citation

Formal styling
Sororendozoicomonas aggregataTs Maire et al., 2024
Effective publication
Maire et al., 2024
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:oe5jqwk0 (validated)
Cannonical URL
https://seqco.de/i:32313

Nomenclature

Rank
Species
Syllabication
ag.gre.ga'ta
Etymology
L. part. adj. aggregata, joined together
Nomenclatural type
NCBI Assembly: GCA_031528575.1
Reference strain
Pac_P3-11-1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Sororendozoicomonas aggregata (ag.gre.ga'ta. L. fem. part. adj. aggregata, joined together, referring to the ability to form aggregates within coral tissues). The new species contains two strains isolated from Pocillopora corals (Pac-P3-11-1, from the present study, and Endozoicomonadaceae SCSIO12664).

Type strain: Pac_P3-11-1, isolated from tissues of the coral Pocillopora acuta, collected from Orpheus Island, Australia (18°36'16.26" S, 146°29'24.27" E). Taxonomic assignment based on concatenated marker gene phylogenies as well as 16S rRNA gene phylogeny. Grows on Marine Agar 2216 (Difco) between 23°C and 28°C, forming circular, white, raised, sticky colonies with entire margins. 

Classification
Bacteria » Pseudomonadota » Gammaproteobacteria » Kangiellales » Endozoicomonadaceae » Sororendozoicomonas » Sororendozoicomonas aggregataTs
Parent
Sororendozoicomonas

Genomics

Accession
NCBI Assembly:GCA_031528575.1
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 97.13%
  • Contamination: 0.88%
  • Quality: 92.73
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
61.0 ×
Source
Other features
  • G+C Content: 46.7%
  • Coding Density: 79.58%
  • Codon Table: 11
  • N50: 37,409 bp
  • Contigs: 201
  • Largest Contig: 102,874 bp
  • Assembly Length: 4,041,637 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Completeness and contamination were assessed with CheckM v1.2.2
rRNA genes were detected via annotation with Bakta v1.7.0
Automated checks
Complete
See additional details

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Maire, Justin 10 months ago
Submitted by
Maire, Justin 8 months ago
Curators
Endorsed by
Palmer, Marike 7 months ago
Validated by
Palmer, Marike 4 months ago
Date of priority
2024-02-05 12:54 AM (UTC)

Publications
1

Citation Title
Maire et al., 2024, The ISME Journal Tissue-associated and vertically transmitted bacterial symbiont in the coral Pocillopora acuta
Effective publication



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