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Sororendozoicomonas aggregataTs

Citation

Formal styling
Sororendozoicomonas aggregataTs Maire et al., 2024
Effective publication
Maire et al., 2024
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:oe5jqwk0 (validated)
Canonical URL
https://seqco.de/i:32313

Nomenclature

Rank
Species
Syllabication
ag.gre.ga'ta
Etymology
L. part. adj. aggregata, joined together
Nomenclatural type
NCBI Assembly: GCA_031528575.1
Reference strain
Strain sc|0038624: Pac_P3-11-1 Lookup StrainInfo
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Sororendozoicomonas aggregata (ag.gre.ga'ta. L. fem. part. adj. aggregata, joined together, referring to the ability to form aggregates within coral tissues). The new species contains two strains isolated from Pocillopora corals (Pac-P3-11-1, from the present study, and Endozoicomonadaceae SCSIO12664).

Type strain: Pac_P3-11-1, isolated from tissues of the coral Pocillopora acuta, collected from Orpheus Island, Australia (18°36'16.26" S, 146°29'24.27" E). Taxonomic assignment based on concatenated marker gene phylogenies as well as 16S rRNA gene phylogeny. Grows on Marine Agar 2216 (Difco) between 23°C and 28°C, forming circular, white, raised, sticky colonies with entire margins. 

Classification
Bacteria » Pseudomonadota » Gammaproteobacteria » Oceanospirillales » Endozoicomonadaceae » Sororendozoicomonas » Sororendozoicomonas aggregataTs
Parent
Sororendozoicomonas gtdb

Genomics

Accession
NCBI Assembly:GCA_031528575.1
Cultures
Strain sc|0038624
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 97.13%
  • Contamination: 0.88%
  • Quality: 92.73
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
61.0 ×
Source
Other features
  • G+C Content: 46.7%
  • Coding Density: 79.58%
  • Codon Table: 11
  • N50: 37,409 bp
  • Contigs: 201
  • Largest Contig: 102,874 bp
  • Assembly Length: 4,041,637 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Completeness and contamination were assessed with CheckM v1.2.2
rRNA genes were detected via annotation with Bakta v1.7.0
Automated checks
Complete
See additional details
Last modified 11 months ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
Over 2 years ago by Maire, Justin
Submitted
About 2 years ago by Maire, Justin
Curators
Endorsed
About 2 years ago by Palmer, Marike
Validated
Almost 2 years ago by Palmer, Marike
Date of priority
2024-02-05 12:54 AM (UTC)

Publications
1

Citation Title
Maire et al., 2024, The ISME Journal Tissue-associated and vertically transmitted bacterial symbiont in the coral Pocillopora acuta
Effective publication


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