Genome sc|0000901


Database

NCBI Assembly

Accession

GCA_031277345.1

Genomics

Accession
NCBI Assembly:GCA_031277345.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 94.39%
  • Contamination: 4.67%
  • Quality: 71.04
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 18 amino acids
Sequencing depth
94.0 ×
Source
Other features
  • G+C Content: 37.53%
  • Coding Density: 78.53%
  • Codon Table: 11
  • N50: 9,894 bp
  • Contigs: 227
  • Largest Contig: 62,532 bp
  • Assembly Length: 1,781,265 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Last modified 10 days ago

Sample Metadata

BioSample entries
Date
Collection Date: 2018-04-18
Location
Lat Lon: 3.391726 N 11.472614 E
Toponym
Geo Loc Name: Cameroon: Ebogo II, Mbalmayo
Environment
Sample Type: metagenomic assembly
Isolation Source: termite gut
Env Broad Scale: terrestrial biome
Env Local Scale: woodland biome
Env Medium: tropical woodland biome
Other
Host: Promirotermes sp.
Package
Biosamplemodel: MIMAG.host-associated • MIGS/MIMS/MIMARKS.host-associated
All retrieved samples

Metadata retrieved 10 days ago

Sequencing Experiments

Metagenome of Promirotermes sp. : gut microbiota


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