Bathycorpusculum hydrogenotrophicum

Citation

Formal styling

Bathycorpusculum hydrogenotrophicum Protasov et al., 2023 (valid 2024)

Effective publication

Protasov et al., 2023

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:hfttq0ec (validated)

Canonical URL

https://seqco.de/i:32521

Nomenclature

Rank

Species

Syllabication

hyd.ro.ge.no.tro.phi'cum

Etymology

N.L. pref. hydrogeno-, pertaining to hydrogen; Gr. masc. adj. trophikos, pertaining to food; N.L. neut. adj. hydrogenotrophicum, feeding on hydrogen

Nomenclatural type

NCBI Assembly: GCA_009783705.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

The species identified by metagenomic analyses. The G+C content of the type genome is 43.2 mol%, and the estimated genome size is 2.24 Mbp.

Classification

Archaea » “Bathyarchaeota” » Bathyarchaeia » Bathyarchaeales » Bathycorpusculaceae » Bathycorpusculum » Bathycorpusculum hydrogenotrophicum

Parent

Bathycorpusculum

Genomics

Accession

NCBI Assembly:GCA_009783705.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 98.6%
• Contamination: 2.8%
• Quality: 84.6

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 40.0%)
• 2 23S rRNAs (up to 63.0%)
• tRNAs for 19 amino acids

Sequencing depth

304.0 ×

Source

• BioSample: SAMN12581916

Other features

• G+C Content: 43.28%
• Coding Density: 83.18%
• Codon Table: 11
• N50: 30,097 bp
• Contigs: 107
• Largest Contig: 121,502 bp
• Assembly Length: 2,243,011 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

CheckM and TRNAscan-SE 2.0 were used to assess genome quality and number of tRNAs. 

Automated checks

Complete

See additional details

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Last modified 6 days ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_009783705.1
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Bathycorpusculum hydrogenotrophicum (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 5 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Protasov, Evgenii about 1 year ago

Submitted by

Protasov, Evgenii 7 months ago

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Validated by

Rodriguez-R, Luis M 6 months ago

Date of priority

2024-04-16 06:48 PM (UTC)