SeqCode Registry
cognitis nomina
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Genomes
sc|0000934
JSON
Genome sc|0000934
Name
Intestinicoccus colisanans
Ts
Database
NCBI Assembly
Accession
GCA_021029595.1
Genomics
Accession
NCBI Assembly:
GCA_021029595.1
Type
Isolate Genome
Estimated Quality Metrics
Completeness:
98.66%
Contamination:
0.0%
Quality:
98.66
Ribosomal and transfer RNA genes
3 16S rRNAs (up to 100.0%)
1 23S rRNA (up to 100.0%)
tRNAs for 19 amino acids
Sequencing depth
312.9 ×
Source
BioSample: SRS11093157
Other features
G+C Content:
52.55%
Coding Density:
88.15%
Codon Table:
11
N50:
454,909 bp
Contigs:
25
Largest Contig:
747,301 bp
Assembly Length:
2,969,717 bp
Ambiguous Assembly Fraction:
0.0002%
Submitter comments
Completeness and contaminated were evaluated by CheckM v1.0.18.
Automated checks
Complete
Last modified
8 days ago
Sample Metadata
BioSample entries
BioSample: SRS11093157
Date
Collection Date:
2020-01-14
Location
Lat Lon:
27.4705 S 153.0260 E
Toponym
Geo Loc Name:
Australia: Brisbane
Environment
Sample Type:
pure culture
Isolation Source:
feces
Env Broad Scale:
organic material [
ENVO:01000155
]
Env Local Scale:
excreta material [
ENVO:02000022
]
Env Medium:
fecal material [
ENVO:00002003
]
Other
Host:
Homo sapiens
Package
Ncbi Submission Package:
Microbe.1.0
Biosamplemodel:
Microbe, viral or environmental
All retrieved samples
SRS11093157
: Microbe sample from Oscillospiraceae bacterium MH27-2
Metadata retrieved
8 days ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SRS11093157
×
Metadata retrieved using the EBI API
BioSample Accession(s)
SRS11093157
strain
MH27-2
collection_date
2020-01-14
INSDC secondary accession
SRS11093157
organism
Oscillospiraceae bacterium MH27-2
env_broad_scale
organic material [ENVO:01000155]
env_local_scale
excreta material [ENVO:02000022]
NCBI submission package
Microbe.1.0
host
Homo sapiens
geo_loc_name
Australia: Brisbane
env_medium
fecal material [ENVO:00002003]
lat_lon
27.4705 S 153.0260 E
isolation_source
feces
sample-type
pure culture
BioSampleModel
Microbe, viral or environmental
ENA-FIRST-PUBLIC
2021-11-24
ENA-LAST-UPDATE
2021-11-24
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