BioSample Accession(s)

SAMN23040992, SRS11093157

strain

MH27-2

INSDC secondary accession

SRS11093157

organism

Hominenteromicrobium mulieris

collection date

2020-01-14

isolation source

feces

env_broad_scale

organic material [ENVO:01000155]

geo loc name

Australia: Brisbane

env_local_scale

excreta material [ENVO:02000022]

NCBI submission package

Microbe.1.0

lat lon

27.4705 S 153.0260 E

host

Homo sapiens

env_medium

fecal material [ENVO:00002003]

sample-type

pure culture

BioSampleModel

Microbe, viral or environmental

ENA-FIRST-PUBLIC

2021-11-24

ENA-LAST-UPDATE

2024-10-30

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX13161736" alias="2" center_name="SUB10649591" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX13161736</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB10649591">2</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Illumina sequencing of Intestinicoccus colisanans: MH27-2</TITLE>
  <STUDY_REF accession="SRP346661">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP346661</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA779583</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>DNA was extracted using the Nextera DNA Flex Direct Colony Method (Illumina) and total DNA was quantified flourometrically. The extracted DNA was processed processed for library preparation with DNA Prep (M) Tagmentation kit (Illumina) using IDT for DNA/RNA UD Index sets A-D (Illumina). Indexed libraries with an average insert size of 500 bp were pooled equally and sequenced.</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS11093157">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS11093157</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN23040992</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>2</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS11093157</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA1330938</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX13161736&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX13161736&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
  <EXPERIMENT_ATTRIBUTES>
    <EXPERIMENT_ATTRIBUTE>
      <TAG>ENA-STATUS-ID</TAG>
      <VALUE>4</VALUE>
    </EXPERIMENT_ATTRIBUTE>
  </EXPERIMENT_ATTRIBUTES>
</EXPERIMENT>
</EXPERIMENT_SET>