ABSTRACT
“
Candidatus
Neoehrlichia mikurensis” is the tick-borne agent of neoehrlichiosis, an infectious disease that primarily affects immunocompromised patients. So far, the genetic variability of “
Ca
. Neoehrlichia” has been studied only by comparing 16S rRNA genes and
groEL
operon sequences. We describe the development and use of a multilocus sequence analysis (MLSA) protocol to characterize the genetic diversity of clinical “
Ca
. Neoehrlichia” strains in Europe and their relatedness to other species within the
Anaplasmataceae
family. Six genes were selected:
ftsZ
,
clpB
,
gatB
,
lipA
,
groEL
, and 16S rRNA. Each MLSA locus was amplified by real-time PCR, and the PCR products were sequenced. Phylogenetic trees of MLSA locus relatedness were constructed from aligned sequences. Blood samples from 12 patients with confirmed “
Ca
. Neoehrlichia” infection from Sweden (
n
= 9), the Czech Republic (
n
= 2), and Germany (
n
= 1) were analyzed with the MLSA protocol. Three of the Swedish strains exhibited identical
lipA
sequences, while the
lipA
sequences of the strains from the other nine patients were identical to each other. One of the Czech strains had one differing nucleotide in the
clpB
sequence from the sequences of the other 11 strains. All 12 strains had identical sequences for the genes 16S rRNA,
ftsZ
,
gatB
, and
groEL
. According to the MLSA, among the
Anaplasmataceae
, “
Ca
. Neoehrlichia” is most closely related to
Ehrlichia ruminantium
, less so to
Anaplasma phagocytophilum
, and least to
Wolbachia
endosymbionts. To conclude, three sequence types of infectious “
Ca
. Neoehrlichia” were identified: one in the west of Sweden, one in the Czech Republic, and one spread throughout Europe.