Cloacimonas acidaminivorans^Ts

Citation

Formal styling

Cloacimonas acidaminivorans^Ts corrig. Pelletier et al., 2008 (valid 2023)

Effective publication

Pelletier et al., 2008

Corrigendum

Oren et al., 2020 from “Cloacamonas acidaminovorans” (sic)

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:tz5nceub (validated)

Canonical URL

https://seqco.de/i:173

Nomenclature

Rank

Species

Syllabication

a.ci.da.mi.ni.vo'rans

Etymology

N.L. neut. n. acidum aminum, amino acid; L. pres. part. vorans, devouring; N.L. fem. part. adj. acidaminivorans, amino acid-devouring

Nomenclatural type

NCBI Assembly: GCA_000146065.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

The complete genome of this species has been reconstructed following the metagenomic sequencing of the sludge sample obtained from the anaerobic mesophilic digester (7,000 m3) at the Evry wastewater treatment plant (250,000 population equivalents), located about 35 km south of Paris, France (48°37′ 33.65"N, 2°27′53.34"E). The genome of this species is represented by a single circular chromosome consisting of 2,246,820 nucleotides with a GC content of 37.9%. The presence of the enzymes involved in the biosynthesis of lipopolysaccharides indicates that is a gram-negative bacterium, which is supported by the detection of the typical signature of gram-negative bacteria found in the dnaK gene. The in silico proteome analysis suggests that this species could grow on a medium that includes glucose, alanine, asparagine, aspartate, glutamate, histidine, lysine, proline, serine, and certain aliphatic carboxylic acids (succinate, lactate, and acetate). The species is inferred to be adapted to an anaerobic lifestyle and also may enable to survive under minimal oxygen concentrations. In silico proteome analysis indicated that this species might derive most of its carbon and energy from the fermentation of amino acids and it is probably a syntrophic bacterium.

Classification

Bacteria » Cloacimonadota » Cloacimonadia » Cloacimonadales » Cloacimonadaceae » Cloacimonas » Cloacimonas acidaminivorans^Ts

Parent

Cloacimonas gtdb

Pseudonyms

• Cloacamonas acidaminovorans (Original, corrected name)

Genomics

Accession

NCBI Assembly:GCA_000146065.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 100.0%
• Contamination: 1.1%
• Quality: 94.5

Ribosomal and transfer RNA genes

• 2 16S rRNAs (up to 100.0%)
• 2 23S rRNAs (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

10.9 ×

Source

• BioSample: ERS379609

Other features

• G+C Content: 37.9%
• Coding Density: 86.52%
• Codon Table: 11
• N50: 2,246,820 bp
• Contigs: 1
• Largest Contig: 2,246,820 bp
• Assembly Length: 2,246,820 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

CheckM1 was used to estimate genome completeness, contamination and the command ssu_finder (checkM1) was used for detection of ssu genes.

Automated checks

Complete

See additional details

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Last modified 4 days ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_000146065.1
• GTDB Tree: s__Cloacimonas acidaminivorans
• Wikispecies: Cloacimonas acidaminivorans (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified over 1 year ago
• Submission process status
• Quality checks before valid publication

Registered by

Chuvochina, Maria almost 2 years ago

Submitted by

Chuvochina, Maria over 1 year ago

Curators

• Rodriguez-R, Luis M
• Palmer, Marike

Endorsed by

Palmer, Marike over 1 year ago

Validated by

Rodriguez-R, Luis M over 1 year ago

Date of priority

2023-07-11 12:11 AM (UTC)