Benthortus lauensis^Ts

Citation

Formal styling

Benthortus lauensis^Ts Buessecker et al., 2022

Effective publication

Buessecker et al., 2022

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:slp2ijs4 (validated)

Canonical URL

https://seqco.de/i:22820

Nomenclature

Rank

Species

Syllabication

lau.en'sis

Etymology

N.L. masc. adj. lauensis, of Lau, referring to the Lau Basin in the Western Pacific, where this organism was identified from

Nomenclatural type

NCBI Assembly: GCA_021650775.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

The MAG of this organism was recovered from metagenomic sequencing data of a deep-water hydrothermal sulfide deposit sample taken from the Lau Basin, in the Western Pacific. The binned genome of this organism is 1,470,116 bp in size, and consists of 112 contigs, with a G+C content of 54.8 %. CheckM-based quality assessment indicates a completeness of 94.0 % and a contamination estimate of 2.91 %. Phylogenomic reconstruction based on 122 conserved archaeal genes place this taxon in the family Wolframiraptoraceae. Only two putative tungsten-dependent AORs were predicted within the genome of this organism 

Classification

Incertae sedis (Archaea) » “Caldarchaeales” » Wolframiiraptoraceae » Benthortus » Benthortus lauensis^Ts

Parent

Benthortus gtdb

Genomics

Accession

NCBI Assembly:GCA_021650775.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 94.0%
• Contamination: 2.94%
• Quality: 79.3

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

34.0 ×

Source

• SRA: SRX10856250

Other features

• G+C Content: 54.8%
• Coding Density: 93.81%
• Codon Table: 11
• N50: 19,743 bp
• Contigs: 112
• Largest Contig: 63,947 bp
• Assembly Length: 1,470,116 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

See additional details

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Last modified about 1 month ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_021650775.1
• GTDB Tree: s__Benthortus lauensis
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Benthortus lauensis (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified about 2 years ago
• Submission process status
• Quality checks before valid publication

Registered by

Palmer, Marike about 3 years ago

Submitted by

Palmer, Marike about 2 years ago

Curators

• Rodriguez-R, Luis M
• Chuvochina, Maria (nomenclature)

Validated by

Rodriguez-R, Luis M about 2 years ago

Date of priority

2022-09-20 03:37 PM (UTC)