Nanopelagicus


Citation

Formal styling
Nanopelagicus Neuenschwander et al., 2018
Effective publication
Neuenschwander et al., 2018
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:kv6gij82 (validated)
Canonical URL
https://seqco.de/i:23834

Nomenclature

Rank
Genus
Inferred stem
Nanopelagic-
Syllabication
Na.no.pe.la'gi.cus
Etymology
N.L. masc. adj. nano, very small; L. masc. adj. pelagicus, belonging to the pelagial; N.L. masc. n. Nanopelagicus, very small pelagic; referring to the small cell and genome size and the pelagic habitat
Nomenclatural type
Nanopelagicus abundansTs
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
The genus Nanopelagicus as well as the family Nanopelagicaceae and order Nanopelagicales was proposed as Candidatus by Neuenschwander et al. (2018, ISMEJ, doi: 10.1038/ismej.2017.156). Three strains were isolated from Lake Zurich, Switzerland, that were proposed as Nanopelagicus abundans, Nanopelagicus limnes and Nanopelagicus hibericus, type strain for the genus is Nanopelagicus abundans MMS-IIB-91 (GCF_002288305.1). Basis of the assignment is a phylogenetic tree of 48 conserved concatenated proteins of >100 complete genomes of all orders of Actinobacteria in Neuenschwander et al. (2018, ISMEJ, doi: 10.1038/ismej.2017.156). The closest cultivated relatives are Planktophila sp. with average amino acid identities of 62-63.9% and average nucleotide identities of 65.9-68.1%. Aerobic chemoheterotrophs. Cells are tiny, non-motile, and inhabit the plankton of freshwaters. The genus is also known as acI-B1 or hgc1 (SILVA classification) from 16S rRNA based studies and is one of the most abundant genera in freshwater lakes. Members of the genus Nanopelagicus can be recognized by the presence of the diagnostic oligonucleotide sequence 5’-ACAAGAGGTTCGTCCGTCC-3’ in the 23S rRNA gene (positions 2669-2688, E. coli numbering). The initial pure cultures were lost after a few propagations to fresh medium; no growing culture is available. The initial cultures grew well in sterile lake water amended with minimal carbon medium, vitamins and amino acids. 
Classification
Bacteria » Actinomycetota » Actinomycetes » Nanopelagicales » Nanopelagicaceae » Nanopelagicus
Parent
Nanopelagicaceae gtdb
Children (3)

Metadata

Outside links and data sources
Search sequences
Local history
Registered
About 3 years ago and claimed 7 months ago by Salcher, Michaela M
Submitted
7 months ago by Salcher, Michaela M
Curators
Validated
6 months ago by Palmer, Marike
Date of priority
2018-01-01 12:00 AM (UTC)   Important note

Publications
1

Citation Title
Neuenschwander et al., 2018, The ISME Journal Microdiversification in genome-streamlined ubiquitous freshwater Actinobacteria
Effective publication



© 2022-2025 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license
seqco.de/r:kv6gij82