Nanopelagicaceae


Citation

Formal styling
Nanopelagicaceae Neuenschwander et al., 2018
Effective publication
Neuenschwander et al., 2018
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:kv6gij82 (validated)
Canonical URL
https://seqco.de/i:23843

Nomenclature

Rank
Family
Inferred stem
Nanopelagic-
Syllabication
Na.no.pe.la.gi.ca'ce.ae
Etymology
N.L. masc. n. Nanopelagicus, referring to the type genus Nanopelagicus; -aceae, ending to denote a family; N.L. fem. pl. n. Nanopelagicaceae, the Nanopelagicus family
Nomenclatural type
Nanopelagicus
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
The family Nanopelagicaceae and the order Nanopelagicales were proposed as Candidatus taxa by Neuenschwander et al. (2018, ISMEJ, doi: 10.1038/ismej.2017.156). It contains two genera, Nanopelagicus and Planktophila, type strain for the family is Nanopelagicus abundans MMS-IIB-91 (GCF_002288305.1). Basis of the assignment is a phylogenetic tree of 48 conserved concatenated proteins of >100 complete genomes of all orders of Actinobacteria in Neuenschwander et al. (2018, ISMEJ, doi: 10.1038/ismej.2017.156). Aerobic chemoheterotrophs. Cells are tiny, non-motile, and inhabit the plankton of freshwaters. The family is also known as acI or hgc1 (SILVA classification) from 16S rRNA based studies and is one of the most abundant microbes in freshwater lakes. Nanopelagicaceae can be recognized by the presence of the diagnostic oligonucleotide sequence 5’-AATGCGTTAGCTGCGTCGCA-3’ in the 16S rRNA gene (positions 852-872, E. coli numbering). The initial pure cultures were lost after a few propagations to fresh medium; no growing culture is available. The initial pure cultures were lost after a few propagations to fresh medium, they were isolated in sterile lake water amended with minimal carbon medium, vitamins and amino acids, no growth was observed in rich medium or on agar plates. No growing culture of Nanopelagicus sp. is available, while some Planktophila sp. strains are actively growing in autoclaved lake water (Kim et al. 2019, ISMEJ, doi: 10.1038/s41396-019-0432-x) or artificial media (Salcher et al., in review). None of the isolated strains were yet submitted to a culture collection because these bacteria are hard to maintain, i.e., they are very slowly growing, reach low densities in liquid culture, and do not grow on agar plates.
Classification
Bacteria » Actinomycetota » Actinomycetes » Nanopelagicales » Nanopelagicaceae
Parent
Nanopelagicales gtdb
Children (3)

Metadata

Outside links and data sources
Search sequences
Local history
Registered
Almost 3 years ago by Salcher, Michaela M
Submitted
7 months ago by Salcher, Michaela M
Curators
Validated
6 months ago by Palmer, Marike
Date of priority
2018-01-01 12:00 AM (UTC)   Important note

Publications
2

Citation Title
Kim et al., 2019, The ISME Journal Culturing the ubiquitous freshwater actinobacterial acI lineage by supplying a biochemical ‘helper’ catalase
Neuenschwander et al., 2018, The ISME Journal Microdiversification in genome-streamlined ubiquitous freshwater Actinobacteria
Effective publication



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