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Brevundimonas phytovorans

Citation

Formal styling
Brevundimonas phytovorans Díaz-García et al., 2024
Effective publication
Díaz-García et al., 2024
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:-kiq_w89 (validated)
Canonical URL
https://seqco.de/i:24099

Nomenclature

Rank
Species
Syllabication
phy.to.vo'rans.
Etymology
Gr. neut. n. phyton, plant; L. pres. part. vorans, devouring, destroying; N.L. fem. part. adj. phytovorans, plant-devouring
Nomenclatural type
INSDC Nucleotide: CP119309.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
A species established on the basis of MiGA taxonomic novelty analyses, AAI, dDDH, 16S rRNA gene phylogenetic reconstruction and the type material is the genome MAG_1865. Genomic metrics include ANI (91.28), AAI (87.92) and dDDH d4 (40.3). The MAG was reconstructed from lignocellulolytic bacterial consortium and encoded for 39 CAZymes, 6 of them involved in lignocellulose degradation. In addition, putative genes for protocatechuate and phtalate catabolism were found within the MAG.
Classification
Bacteria » Pseudomonadota » Alphaproteobacteria » Caulobacterales » Caulobacteraceae » Brevundimonas » Brevundimonas phytovorans
Parent
Brevundimonas gtdb

Genomics

Accession
INSDC Nucleotide:CP119309.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 99.68%
  • Contamination: 0.16%
  • Quality: 98.88
Ribosomal and transfer RNA genes
  • 3 16S rRNAs (up to 100.0%)
  • 3 23S rRNAs (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
20.0 ×
Source
Other features
  • G+C Content: 67.47%
  • Coding Density: 89.69%
  • Codon Table: 11
  • N50: 3,220,063 bp
  • Contigs: 1
  • Largest Contig: 3,220,063 bp
  • Assembly Length: 3,220,063 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Dfast was used to identify rRNA genes. Completion and contamination were estimated by CheckM.
Automated checks
Complete
See additional details
Last modified 4 days ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Díaz-García, Laura over 1 year ago
Submitted by
Díaz-García, Laura over 1 year ago
Curators
Endorsed by
Palmer, Marike over 1 year ago
Validated by
Palmer, Marike 10 months ago
Date of priority
2024-01-25 09:26 AM (UTC)

Publications
1

Citation Title
Díaz-García et al., 2024, Systematic and Applied Microbiology Andean soil-derived lignocellulolytic bacterial consortium as a source of novel taxa and putative plastic-active enzymes
Effective publication


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