Sacchariniichlamydia saccharinaeTs


Citation

Formal styling
Sacchariniichlamydia saccharinaeTs corrig. Davison, Hurst, 2023
Effective publication
Davison, Hurst, 2023
Corrigendum
In SeqCode Registry from “Sacchlamyda saccharinae” (sic)
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:bsk8pkm4 (validated)
Cannonical URL
https://seqco.de/i:31324

Nomenclature

Rank
Species
Syllabication
sac.cha.ri'nae
Etymology
N.L. gen. n. saccharinae, of Saccharina seaweed
Nomenclatural type
NCBI Assembly: GCA_030408505.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
A species of Rhabdochlamydiaceae bacteria. The type species was extracted through a metagenomic assembly pipeline applied to the seaweed Saccharina japonica (accession SRR2043156). Species status was established based on sharing <95% Average Nucleotide Identity (ANI) with any other Rhabdochlamydiaceae.

Classification
Bacteria » Chlamydiota » Chlamydiia » Parachlamydiales » “Rhabdochlamydiaceae” » Sacchariniichlamydia » Sacchariniichlamydia saccharinaeTs
Parent
Sacchariniichlamydia gtdb
Pseudonyms
  • Sacchlamyda saccharinae (Original, corrected name)

Genomics

Accession
NCBI Assembly:GCA_030408505.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 91.05%
  • Contamination: 0.9%
  • Quality: 86.55
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 96.0%)
  • tRNAs for 20 amino acids
Sequencing depth
26.0 ×
Source
Other features
  • G+C Content: 45.53%
  • Coding Density: 93.42%
  • Codon Table: 11
  • N50: 1,168,685 bp
  • Contigs: 4
  • Largest Contig: 1,168,685 bp
  • Assembly Length: 1,734,283 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
See full comment
Automated checks
Complete
See additional details

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Davison, Helen Rebecca about 1 year ago
Submitted by
Davison, Helen Rebecca 8 months ago
Curators
Endorsed by
Palmer, Marike 6 months ago
Validated by
Palmer, Marike 6 months ago
Date of priority
2023-12-05 12:08 PM (UTC)

Publications
1

Citation Title
Davison, Hurst, 2023, Systematic and Applied Microbiology Hidden from plain sight: Novel Simkaniaceae and Rhabdochlamydiaceae diversity emerging from screening genomic and metagenomic data
Effective publication



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