Sacchariniichlamydia saccharinae^Ts

Citation

Formal styling

Sacchariniichlamydia saccharinae^Ts corrig. Davison, Hurst, 2023

Effective publication

Davison, Hurst, 2023

Corrigendum

In SeqCode Registry from “Sacchlamyda saccharinae” (sic)

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:bsk8pkm4 (validated)

Canonical URL

https://seqco.de/i:31324

Nomenclature

Rank

Species

Syllabication

sac.cha.ri'nae

Etymology

N.L. gen. n. saccharinae, of Saccharina seaweed

Nomenclatural type

NCBI Assembly: GCA_030408505.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

A species of Rhabdochlamydiaceae bacteria. The type species was extracted through a metagenomic assembly pipeline applied to the seaweed Saccharina japonica (accession SRR2043156). Species status was established based on sharing <95% Average Nucleotide Identity (ANI) with any other Rhabdochlamydiaceae.

Classification

Bacteria » Chlamydiota » Chlamydiia » Parachlamydiales » “Rhabdochlamydiaceae” » Sacchariniichlamydia » Sacchariniichlamydia saccharinae^Ts

Parent

Sacchariniichlamydia gtdb

Pseudonyms

• Sacchlamyda saccharinae (Original, corrected name)

Genomics

Accession

NCBI Assembly:GCA_030408505.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 91.05%
• Contamination: 0.9%
• Quality: 86.55

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 96.0%)
• tRNAs for 20 amino acids

Sequencing depth

26.0 ×

Source

• SRA: SRR2043156

Other features

• G+C Content: 45.53%
• Coding Density: 93.42%
• Codon Table: 11
• N50: 1,168,685 bp
• Contigs: 4
• Largest Contig: 1,168,685 bp
• Assembly Length: 1,734,283 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

See full comment

Automated checks

Complete

See additional details

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Last modified 10 days ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_030408505.1
• GTDB Tree: s__Sacchariniichlamydia saccharinae
• Wikispecies: Sacchariniichlamydia saccharinae (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 10 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Davison, Helen Rebecca over 1 year ago

Submitted by

Davison, Helen Rebecca 12 months ago

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Endorsed by

Palmer, Marike 10 months ago

Validated by

Palmer, Marike 10 months ago

Date of priority

2023-12-05 12:08 PM (UTC)