Rhodopirellula halodulae

Citation

Formal styling

Rhodopirellula halodulae Sreya et al., 2024

Effective publication

Sreya et al., 2024

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:3hzkryc4 (validated)

Canonical URL

https://seqco.de/i:32108

Nomenclature

Rank

Species

Syllabication

ha.lo.du'lae

Etymology

N.L. gen. n. halodulae, of Halodule, a seagrass genus from which the new strain was isolated

Nomenclatural type

NCBI Assembly: GCF_020966775.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

Pink pigmented, oval to pear-shaped cells, form aggregates and divides by budding. Aerobic, marine, and mesophilic with optimum temperature for growth is 25 degrees Celsius, and grows in pH range of 6-10 (optimum pH 7.0). The type strain is JC737 isolated from the surface of a seagrass Halodule sp. from Tamil Nadu India. The genome of the type strain is deposited with accession number JAJKFV000000000 (GCA_020966775.1).

Classification

Bacteria » Planctomycetota » Planctomycetia » Pirellulales » Pirellulaceae » Rhodopirellula » Rhodopirellula halodulae

Parent

Rhodopirellula ncbi

Genomics

Accession

NCBI Assembly:GCF_020966775.1

Type

Isolate Genome

Estimated Quality Metrics

• Completeness: 94.3%
• Contamination: 1.9%
• Quality: 84.8

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

100.0 ×

Source

• BioSample: SAMN23076856

Other features

• G+C Content: 56.24%
• Coding Density: 88.78%
• Codon Table: 11
• N50: 663,819 bp
• Contigs: 33
• Largest Contig: 2,516,066 bp
• Assembly Length: 6,608,739 bp
• Ambiguous Assembly Fraction: 0.018%

Automated checks

Complete

See additional details

Metadata

Outside links and data sources

• NCBI Taxonomy: 2894198
• GTDB Genome: GCF_020966775.1
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Rhodopirellula halodulae (see reference source)

Search sequences

• Seach in NCBI Nucleotide
• NCBI Genomes table

Local history

• This name was last modified 2 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Chintalapati, Venkata Ramana over 1 year ago

Submitted by

Chintalapati, Venkata Ramana 3 months ago

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Endorsed by

Palmer, Marike about 1 year ago

Validated by

Rodriguez-R, Luis M 2 months ago

Date of priority

2024-08-01 07:35 AM (UTC)