Methanocatella oralis

Citation

Formal styling

Methanocatella oralis Protasov et al., 2023 (valid 2024)

Effective publication

Protasov et al., 2023

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:hfttq0ec (validated)

Canonical URL

https://seqco.de/i:32436

Nomenclature

Rank

Species

Syllabication

o.ra'lis

Etymology

L. fem. adj. oralis, pertaining to the mouth

Nomenclatural type

NCBI Assembly: GCF_001639275.1

Reference strain

ZR = DSM 7256 = JCM 30027

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

Cells are short, oval rods with tapered ends, 0.4–0.5 μm in width and 0.7–1.2 μm in length, occurring most frequently in pairs or short chains. Cells give a Gram-positive reaction when less than 4 d old. Ultrathin sections show a tristratified cell wall that is highly invaginated. Nonmotile (as in Miller, 2015). The G+C content of the type genome is 27.7 mol%, and the genome size is 2.14 Mbp. 

Classification

Archaea » Methanobacteriota » Methanobacteria » Methanobacteriales » Methanobacteriaceae » Methanocatella » Methanocatella oralis

Parent

Methanocatella

Alternative placements

• Methanobrevibacter assigned in Ferrari et al., 1994

Genomics

Accession

NCBI Assembly:GCF_001639275.1

Type

Isolate Genome

Estimated Quality Metrics

• Completeness: 100.0%
• Contamination: 0.0%
• Quality: 100.0

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 19 amino acids

Sequencing depth

179.0 ×

Source

• BioSample: SAMN04867341

Other features

• G+C Content: 27.71%
• Coding Density: 83.99%
• Codon Table: 11
• N50: 45,270 bp
• Contigs: 136
• Largest Contig: 154,300 bp
• Assembly Length: 2,140,433 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

Methanobrevibacter oralis

Automated checks

Complete

See additional details

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Last modified 4 days ago

Metadata

Outside links and data sources

• GTDB Genome: GCF_001639275.1
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Methanocatella oralis (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 5 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Protasov, Evgenii about 1 year ago

Submitted by

Protasov, Evgenii 7 months ago

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Validated by

Rodriguez-R, Luis M 6 months ago

Date of priority

2024-04-16 06:48 PM (UTC)