Methanocatella smithii^Ts

Citation

Formal styling

Methanocatella smithii^Ts Protasov et al., 2023 (priority 2024)

Effective publication

Protasov et al., 2023

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:hfttq0ec (validated)

Canonical URL

https://seqco.de/i:32433

Nomenclature

Rank

Species

Syllabication

smith'i.i

Etymology

N.L. gen. masc. n. smithii, of Smith, named after P.H. Smith, who isolated the type strain

Nomenclatural type

NCBI Assembly: GCF_000016525.1

Reference strain

Strain sc|0038587: ATCC 35061 = PS = DSM 861 Lookup StrainInfo

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

The species identified by metagenomic analyses. The G+C content of the type genome is 31.0 mol%, and the genome size is 1.85 Mbp. Cells are short oval rods or coccobacilli with tapered ends, 0.6–0.7 μm in width and ∼1.0 μm in length. Cells occur most frequently in pairs or in chains of 4–6 cells. Gram positive. Nonmotile. H2 and CO2 are the preferred energy sources. Growth on formate is poor. Cells grow optimally at 37 to 39 °C. (as in Balch et al., 1979; Miller, 2015).

Classification

Archaea » Methanobacteriota » Methanobacteria » Methanobacteriales » Methanobacteriaceae » Methanocatella » Methanocatella smithii^Ts

Parent

Methanocatella gtdb

Alternative placements

• Methanobrevibacter assigned in Balch et al., 1979

Genomics

Accession

NCBI Assembly:GCF_000016525.1

Cultures

Strain sc|0038587

Type

Isolate Genome

Estimated Quality Metrics

• Completeness: 100.0%
• Contamination: 0.0%
• Quality: 100.0

Ribosomal and transfer RNA genes

• 2 16S rRNAs (up to 100.0%)
• 2 23S rRNAs (up to 100.0%)
• tRNAs for 19 amino acids

Sequencing depth

100.0 ×

Source

• BioSample: SAMN02604313

Other features

• G+C Content: 31.03%
• Coding Density: 89.96%
• Codon Table: 11
• N50: 1,853,160 bp
• Contigs: 1
• Largest Contig: 1,853,160 bp
• Assembly Length: 1,853,160 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

Methanobrevibacter smithii

Automated checks

Complete

See additional details

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Last modified 11 months ago

Metadata

Outside links and data sources

• GTDB Genome: GCF_000016525.1
• GTDB Tree: s__Methanocatella smithii
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Methanocatella smithii
• Wikidata: Q130531914

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified over 1 year ago
• Submission process status
• Quality checks before valid publication

Registered

Over 2 years ago by Protasov, Evgenii

Submitted

Over 1 year ago by Protasov, Evgenii

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Validated

Over 1 year ago by Rodriguez-R, Luis M

Date of priority

2024-04-16 06:48 PM (UTC)