Methanobinarius arboriphilus^Ts

Citation

Formal styling

Methanobinarius arboriphilus^Ts Protasov et al., 2023 (valid 2024)

Effective publication

Protasov et al., 2023

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:hfttq0ec (validated)

Canonical URL

https://seqco.de/i:32443

Nomenclature

Rank

Species

Syllabication

ar.bo.ri'phi.lus

Etymology

L. fem. n. arboris, tree; N.L. masc. adj. philus, friend, loving; N.L. masc. adj. arboriphilus, tree-loving

Nomenclatural type

NCBI Assembly: GCF_002072215.1

Reference strain

JCM 13429 = DSM 1125 = DH1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

Cells are short rods with rounded ends, 0.5 μm in width and 1.2–1.4 μminlength. Some cells may have a slighdy truncated end. They occur singly or in pairs. Growth is stimulated by trypticase peptones, yeast extract, and rumen fluid. H2 and CO2 may be the sole or preferred energy sources. The optimal temperature for growth was 30 to 37 °C. (as in Zeikus and Henning, 1975; Miller, 2015). The G+C content of the type genome is 25.4 mol%, and the genome size is 2.44 Mbp. 

Classification

Archaea » Methanobacteriota » Methanobacteria » Methanobacteriales » Methanobacteriaceae » Methanobinarius » Methanobinarius arboriphilus^Ts

Parent

Methanobinarius

Alternative placements

• Methanobrevibacter assigned in Balch et al., 1979

Genomics

Accession

NCBI Assembly:GCF_002072215.1

Type

Isolate Genome

Estimated Quality Metrics

• Completeness: 100.0%
• Contamination: 0.0%
• Quality: 100.0

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

92.8 ×

Source

• BioSample: SAMN03267482

Other features

• G+C Content: 25.44%
• Coding Density: 74.87%
• Codon Table: 11
• N50: 111,976 bp
• Contigs: 40
• Largest Contig: 374,571 bp
• Assembly Length: 2,445,031 bp
• Ambiguous Assembly Fraction: 8.2e-05%

Submitter comments

Methanobrevibacter arboriphilus JCM 13429 = DSM 1125 

Automated checks

Complete

See additional details

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Last modified about 1 month ago

Metadata

Outside links and data sources

• GTDB Genome: GCF_002072215.1
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Methanobinarius arboriphilus (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 6 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Protasov, Evgenii over 1 year ago

Submitted by

Protasov, Evgenii 8 months ago

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Validated by

Rodriguez-R, Luis M 7 months ago

Date of priority

2024-04-16 06:48 PM (UTC)